Nudd047992.1
Basic Information
- Insect
- Notocelia uddmanniana
- Gene Symbol
- -
- Assembly
- GCA_905163555.1
- Location
- LR991076.1:4551752-4587317[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 1.1 1.2e+02 5.0 0.0 1 23 117 139 117 139 0.92 2 14 0.00064 0.073 15.1 2.2 1 23 265 287 265 287 0.99 3 14 7.7e-05 0.0088 18.1 0.3 1 23 293 316 293 316 0.96 4 14 0.0015 0.18 14.0 3.7 1 23 321 344 321 344 0.94 5 14 0.0001 0.012 17.7 2.1 3 23 510 530 508 530 0.97 6 14 4.4e-05 0.005 18.8 2.3 1 23 536 558 536 558 0.99 7 14 0.42 48 6.3 4.5 1 23 612 634 612 634 0.96 8 14 0.0054 0.62 12.2 1.6 1 23 669 691 669 691 0.95 9 14 0.00036 0.041 15.9 1.2 1 23 697 719 697 719 0.96 10 14 0.0011 0.13 14.4 2.9 1 23 728 750 728 750 0.99 11 14 0.00019 0.022 16.8 0.6 2 23 797 818 797 818 0.97 12 14 0.028 3.2 10.0 6.3 1 23 835 857 835 857 0.96 13 14 1.7e-06 0.0002 23.2 0.7 1 23 863 885 863 885 0.98 14 14 8.1e-07 9.2e-05 24.3 3.1 1 23 891 914 891 914 0.98
Sequence Information
- Coding Sequence
- ATGGACCAACATATGGAGATGGATCCACTGAGCACATATGACTACCAATACAGTTACCAGCACCTGCCCTATACCTACCCTTATGACATAAAACTTGAGCAACCACTCTCACATTACGCTAACCTAGCTAACATACAGCAGAACCAAACAACACAACCGGTCGAATTACCTCCCATACCTCAAGATACATTCAAAGATAGTAGTAATATTAATGTACCAACAATACCAACTGGCAGTCAAGAAAAAAAAGAGGAAATACCTCTATTTGACCTTAATAGAGTGAAAAAGGAAGGCGGTAAGAAAAGTAATTACTGGTCACAAAAAATTACCGATGAGAACTACCCATTCTATGCTTGTGCTTTATGTAATGTAAGCTATAAGTTATTGAGAGAATTGGATGCACATTTAGTCGATCACAAAGAAAGACTTACTAGCTATGACTTACGGATCAAGAATAAGCAGAAGAAGAAACAGTTGAAAAAGGAACAGAAGAAGTTAAAAAAGCTGAAGAAAGAAGTGAAGCAAGAAGAGATAGAGATTAAACCAGAAGACGGTTATATAGGAAGTGAGAAAGCAGCGGATTTCGTTGAGAACTCGTTATTGAATGACGGTACTGGGAATGTTGAGAATGTTACCCAAACTAATGATAAGGTTGTAAATAATCATGTAAATAATACTGAAAGTAATTCGGAAACTGTAAGTAAAAGTGATGATAATAATGAGAGTGTAAATAAGGATGCGAAGGTTGGAGAAGCGGAGAAGGAGGAGTATAATAAGGATTTGGAGAAGATTTACAAATGCTCTGCATGTCAAAAGCAGTTCTCTTTAAGTTATTACTTGAAATTACACGTCAGATCTCATACAGATGAAAAACCTTACACATGTGCCGAATGCGGGCAGTCGTTCATAACGGCGAGCAAACTAGGGCGGCACAACAAGAGGATACATCTGGCCATCAAATACCAGTGTCGGATATGCTACAAGATCTTCACCAGGTTCGAGTATCTCACGCGGCATTTCGATAAAAAACACGCTGAAGACAAATTGGAGGGCGAACCATACGACTACAACGCGATCCTCCCCTATCTAAAAGAGCTGGAAGAGCAACTTCGTGAGAAAGCGCAAGCGGAAGCGGAGAGCAAACCGAAGACGGAAGAGCTGTGGAGCGACTGGCCGGAAGTGGACCAGGCGTGTCTGCAGGACAGAACGGACATAGAGGACAGGAAGGACTTTGCTATGAACCATTTGGATATCGTCATGGACGACGTTAAGGTGCCCGTGGAAACGATGGAGACAGAGATGGAAATAGAAATCAAGGTGGAGCAGGAGAAGGACGACGATAACCCTGGTATGGATCATGCGCAGGACGACCTGCCTGACGCGGATCATCGTGACGACGTGAAAGATGAGAGTGTATCCGACGAGGACTACTTTCCGTCGAACACGTGGGCGGAGCCTCCCAACATGTCCCCCGCGCCGCAGTCCCCGCCCCGCGGCCGCCGCTCCAAGCACGACGGCCCGCTGGCCTGCAAGATATGCGACAAGAAGATCAGCACGCACTCCTACATGAGGATACATATGCGTACGCACACTGGGGAGAAGCCGTACAAGTGTTACATATGCGGGAGAGGGTTTATTACGTCCAGCAAGATGCACCGGCACGTGTTGACGCATGAGGAGACAAAAGACGGTGTCAAGACGGAAGGCGTTGACGTGAAAGAAGAAGACGACACGAAGAAAGAGGGAGATGGAGAGCAGACAGAgaaaaaaccaaaaatgaaGCTAAGAAAGAAAAAAGGCGAGAAGCAGAAACGCAACTACAAAAAGCGCCCACACGCTTGCGAGTTCTGTCAGAAACGGTTCTTGCATCTCGAGATGTTGCAAGTTCATAAAAAGTCGCACGAGGGGGAGAGTGCCTCGCTCAAGTGCTATTATTGCCTCGCGGATATAGAGGACGAGGCGGTGTTGAAGGAGCATGAAGCCACGCATTCCGGCCCTAAGCCGTTCCTGTGTACGCTTTGCGGGAAGGGGTACAAGCGGAGGGAGACTATGGTGTACCACCGCAAAAACCACAAGTCCGAGAAGAAGTTCATCTGCGACATTTGCTCGAAGACGTTCAACGCGCCGTGCAAGCTGCAGCGGCACATTGTGAGCCACCGCGCCGACAAGTTCGTGCTGAGATACGAGTGCCCCGTCTGTGCGCACATGTTCAACACCAAATATCACGTGCAAATGCATCTGTCCACGCACCAGAAGGAGGGCTTGATCCTGGAAGAGAATCGCAACGACATCCTAGCCATGGTTCTTCAGAACGCGCGCAAGATACCCAAACAGGGCGACGCTCCAACCAACCTAGCGGACTTGATCCCGGCCGACGAGCGAAGTCGCGTCTGCAACATATGCGGCGAAGTATTCCAACACTTCTACTACCTGGAGGAGCATTTGAAAAGCCACGGCTCCCGCATCGCTATAGAGGACGAGAACAAACCGGAAGAGCGGAAACACGTCTGCCAAGTATGCAACAAGAGCTTTAAACTACACTACTACTTGAAACTACACAGTTTTACGCACACAAAGGAGAAACCTTACATTTGCCAGCAGTGCGGGAAAGGGTTCATTACTAAAGGTAAACTTAAAAGGCATTTGGAGACTCATTCCGGCTTGAAGAAGTACCAATGCCATATATGTTATAAGTTCTTCACGAGACCTAGTTATTTGAGGATACATGTAAGGACTATACACGGGAATCAGGATTATAATTTTAGGGTCGGGAAGGAGTTTGGGATAGCTGCGCCTTTGAATGCGCTTTCGGTAATGACGCAATATGGTAGTTAA
- Protein Sequence
- MDQHMEMDPLSTYDYQYSYQHLPYTYPYDIKLEQPLSHYANLANIQQNQTTQPVELPPIPQDTFKDSSNINVPTIPTGSQEKKEEIPLFDLNRVKKEGGKKSNYWSQKITDENYPFYACALCNVSYKLLRELDAHLVDHKERLTSYDLRIKNKQKKKQLKKEQKKLKKLKKEVKQEEIEIKPEDGYIGSEKAADFVENSLLNDGTGNVENVTQTNDKVVNNHVNNTESNSETVSKSDDNNESVNKDAKVGEAEKEEYNKDLEKIYKCSACQKQFSLSYYLKLHVRSHTDEKPYTCAECGQSFITASKLGRHNKRIHLAIKYQCRICYKIFTRFEYLTRHFDKKHAEDKLEGEPYDYNAILPYLKELEEQLREKAQAEAESKPKTEELWSDWPEVDQACLQDRTDIEDRKDFAMNHLDIVMDDVKVPVETMETEMEIEIKVEQEKDDDNPGMDHAQDDLPDADHRDDVKDESVSDEDYFPSNTWAEPPNMSPAPQSPPRGRRSKHDGPLACKICDKKISTHSYMRIHMRTHTGEKPYKCYICGRGFITSSKMHRHVLTHEETKDGVKTEGVDVKEEDDTKKEGDGEQTEKKPKMKLRKKKGEKQKRNYKKRPHACEFCQKRFLHLEMLQVHKKSHEGESASLKCYYCLADIEDEAVLKEHEATHSGPKPFLCTLCGKGYKRRETMVYHRKNHKSEKKFICDICSKTFNAPCKLQRHIVSHRADKFVLRYECPVCAHMFNTKYHVQMHLSTHQKEGLILEENRNDILAMVLQNARKIPKQGDAPTNLADLIPADERSRVCNICGEVFQHFYYLEEHLKSHGSRIAIEDENKPEERKHVCQVCNKSFKLHYYLKLHSFTHTKEKPYICQQCGKGFITKGKLKRHLETHSGLKKYQCHICYKFFTRPSYLRIHVRTIHGNQDYNFRVGKEFGIAAPLNALSVMTQYGS*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00660552;
- 90% Identity
- -
- 80% Identity
- -