Nudd034681.1
Basic Information
- Insect
- Notocelia uddmanniana
- Gene Symbol
- -
- Assembly
- GCA_905163555.1
- Location
- LR991066.1:13885430-13897741[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 4.9e-05 0.0056 18.7 0.0 1 23 64 86 64 86 0.99 2 11 9.1e-06 0.001 21.0 2.1 1 23 92 114 92 114 0.99 3 11 0.029 3.4 9.9 1.8 1 23 121 143 121 143 0.98 4 11 4.9e-07 5.6e-05 25.0 2.3 1 23 149 171 149 171 0.99 5 11 0.034 3.9 9.7 1.8 1 23 178 200 178 200 0.98 6 11 2e-06 0.00023 23.0 1.5 1 23 206 228 206 228 0.99 7 11 0.00038 0.043 15.9 0.7 1 23 235 257 235 257 0.99 8 11 2.2e-06 0.00025 22.9 1.9 1 23 263 285 263 285 0.98 9 11 0.0016 0.19 13.9 0.3 1 20 291 310 291 313 0.93 10 11 3.1e-05 0.0036 19.3 1.4 2 23 320 341 319 341 0.96 11 11 2.8e-06 0.00033 22.6 1.4 1 23 347 370 347 370 0.97
Sequence Information
- Coding Sequence
- ATGACGCTCACTTGGCGCGTCGGTATCCAAATCGATACCGTATCGAAAAGGGGTTCAAAATTGGGGTATCGGTCGCCGATCGCGACGCTATTCGGCCGGGATCGGCAGCGGCCGGCCGCTCGGCCAGTGCGTCGGCGACGTGCGTTACTCGCTTTTGTGTGTGCACTGGGCGCAGTGCAAGGGCGCCCTTACACGTGCGGGCTTTGCCCGGCGGCCTTCGCCCGCCGCCCCTACCTGGACATTCACATGCGCACGCACACAGGCGAGCGGCCGTATCAGTGCGACGCCTGTCTCAAGCGCTTCACGCAGAAGTCCAGCCTCAATATACATAAGCGGACGCACACAGTCCAGGGCAGACCGTTCCAGTGCCTGTCGTGTCCCGCCGCCTTCACGTGCAAGCAGTACCTGGAGATACACACGCGCACTCACACCGGCGAGCGTCCCTATCAGTGCGACATCTGCCTCAAGCGGTTCACGCAGAAATCCAGCCTCAACATCCACAAGCGGACCCACTCAGTGCAGGGACGGCCCTTCCAGTGTCTGCAGTGTCCGGCCGCATTCACGTGCAAGCAGTACCTGGAGATCCACAACCGCACTCATACCGGGGAGAGGCCTTATCAGTGTGACGTCTGCCTGAAGAGATTCGCGCAAAAGTCCACACTTAACATACACAAACGAACGCACACAGTGCAAGGTCGGCCGTATCAATGCATGGAGTGCCCGGCCGCGTTCACTTGCAAGCCCTACTTGGAGATCCACATGCGGACTCACACTGGCGAGAGACCGTTTGAGTGCGATGTCTGTTACAAGCGCTTCACGCAGAAATCGACGCTCAACATTCACAAGCGAATTCACACCGGGGAACGGCCATATGCTTGTGACATATGTCAGAAACGATTCGCCGTCAAGAGCTACGTAACAGCGCACAGATGGTCGCACGTGGCCGACAAGCCGCTGAACTGCGACCGCTGCTCGATGACGTTCACCTCCAAGTCGCAGTTCGCGCTGCACATCCGCACGCACTCGGCCGGCTCCTGCTACGAGTGCAGCGTCTGCGGACGCACTTTCGTCAGGGACAGCTATCTAATACGACACCACAATCGCGTGCATCGCGAGAACCACAGTAACGTGTCGGCGAACAGCATCGGGACTATAAACAGCGTCGCGACCAACGCTAATAATTCGAACAACAGCAATTATGATTCACCCGGCGTTTGTGACTTAAGcttTGTCCCTATGGTGAATCGTTATATGACTTCGCAAGGAACACAGGTCTCCATGCAAGACACGAGCAAGATGTCTGCTATGTCGCCACAATCAATCGCGTCGATATCTTCGCCGCCTCCGCCGCACACACCCACTCCACAGCCCCAAATGTCGGGTCAGATGCATCTGGCCGACTGA
- Protein Sequence
- MTLTWRVGIQIDTVSKRGSKLGYRSPIATLFGRDRQRPAARPVRRRRALLAFVCALGAVQGRPYTCGLCPAAFARRPYLDIHMRTHTGERPYQCDACLKRFTQKSSLNIHKRTHTVQGRPFQCLSCPAAFTCKQYLEIHTRTHTGERPYQCDICLKRFTQKSSLNIHKRTHSVQGRPFQCLQCPAAFTCKQYLEIHNRTHTGERPYQCDVCLKRFAQKSTLNIHKRTHTVQGRPYQCMECPAAFTCKPYLEIHMRTHTGERPFECDVCYKRFTQKSTLNIHKRIHTGERPYACDICQKRFAVKSYVTAHRWSHVADKPLNCDRCSMTFTSKSQFALHIRTHSAGSCYECSVCGRTFVRDSYLIRHHNRVHRENHSNVSANSIGTINSVATNANNSNNSNYDSPGVCDLSFVPMVNRYMTSQGTQVSMQDTSKMSAMSPQSIASISSPPPPHTPTPQPQMSGQMHLAD*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00958832;
- 90% Identity
- iTF_00382939;
- 80% Identity
- -