Basic Information

Insect: Notocelia uddmanniana
Gene Symbol: -
Assembly: GCA_905163555.1
Location: LR991071.1:15270869-15288816[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 9.9e-05 0.011 17.7 6.4 1 23 181 203 181 203 0.98

2 13 3.3e-06 0.00038 22.3 0.2 3 23 217 237 216 237 0.98

3 13 0.00023 0.026 16.6 2.0 2 23 246 267 246 267 0.98

4 13 0.00021 0.024 16.7 1.8 1 23 273 295 273 295 0.98

5 13 1.5e-05 0.0017 20.3 1.1 1 23 301 323 301 323 0.98

6 13 2.3e-05 0.0027 19.7 8.4 2 23 330 351 329 351 0.97

7 13 6.5e-06 0.00075 21.4 0.7 1 23 357 379 357 379 0.98

8 13 1.5e-05 0.0017 20.3 1.3 1 23 385 407 385 407 0.98

9 13 0.0023 0.26 13.4 2.8 1 23 413 435 413 435 0.98

10 13 0.0018 0.21 13.7 1.3 1 23 441 463 441 463 0.96

11 13 0.0025 0.28 13.3 1.2 3 23 471 491 469 491 0.97

12 13 0.00045 0.052 15.6 1.2 1 23 497 519 497 519 0.98

13 13 0.0012 0.14 14.3 2.4 1 23 567 589 567 589 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	9.9e-05	0.011	17.7	6.4	1	23	181	203	181	203	0.98
2	13	3.3e-06	0.00038	22.3	0.2	3	23	217	237	216	237	0.98
3	13	0.00023	0.026	16.6	2.0	2	23	246	267	246	267	0.98
4	13	0.00021	0.024	16.7	1.8	1	23	273	295	273	295	0.98
5	13	1.5e-05	0.0017	20.3	1.1	1	23	301	323	301	323	0.98
6	13	2.3e-05	0.0027	19.7	8.4	2	23	330	351	329	351	0.97
7	13	6.5e-06	0.00075	21.4	0.7	1	23	357	379	357	379	0.98
8	13	1.5e-05	0.0017	20.3	1.3	1	23	385	407	385	407	0.98
9	13	0.0023	0.26	13.4	2.8	1	23	413	435	413	435	0.98
10	13	0.0018	0.21	13.7	1.3	1	23	441	463	441	463	0.96
11	13	0.0025	0.28	13.3	1.2	3	23	471	491	469	491	0.97
12	13	0.00045	0.052	15.6	1.2	1	23	497	519	497	519	0.98
13	13	0.0012	0.14	14.3	2.4	1	23	567	589	567	589	0.98

Sequence Information

Coding Sequence: ATGGCTGCTGTTAGTCATTTAAAACCTTTGcaatttgataaaatatgtcGGGCTTGTTTGCAAATCAAGAAAGACATGAGGCCTTTATTCGAACAACTTACTGCAACGATGCTGATGGGCATTTCTAAGGTGCAGGTGTCCGTCGGCGACGGCTTCCCGTCTCAGCTTTGTCTGCAGTGCGTGCACCAGATCTCGCGATGTCACGCCTTCAAGGAGCAAGTCGAGCGGAATGACATCTTGTTACGCGAGCACGCGAAACTCGTCGCTGAGGAGGCGCGCAGTAATGAGGAGAAAGTCCTAAGTCTGGTGCCTGACGGGCAGTACATCCAGTACATCGAGCTGCCCATGAACACGATGAACAGCGCGCCACCGCTGCTCGACGGGCTGTTTGAGCCGCTGCCTGAGAAAAACGACTTCGAGGAGACCAAACAGACCGACAGCTCACCAGCCAGCAAAGAAGAGTCCGCCCTCAACTCTGACGAAGAGAACTACCTCCAACTAGTAGTCTTCCAGGCAACGTCATCAGTATCACCGGGTCGCCATGTCTGTAACCTGTGCCATAAGGAGTTCAAACACGCCCGCTGGCTTAAACTCCATATGAGATCCCATAGTAACTGGATAAAGGCCAACTGCAAGAAGCCCCCAATGTGTCCCATCTGTGAGCGGACCTTCAAGGGCCCTGGAATGCTAAAGATGCACATGCGGACACACGAGCACCGGCCGCCTAAGCAGCCAACATGTTCGGTCTGCCAGCGTAACTTCCCCACCAAGACCCTGCTCTACCGCCACCGGCAGACCCACTTCGAGCAGAAGGCCCACCAGTGCTCCGTCTGCGAGAAGAGgttctacaGCGGGTACGCCCTGCGTTCACATATGGCGCGTCATCGAGGCGAGCGCCCTTATGTGTGCTCCATGTGTTCAAAGAGTTTCTACAACCCGACTGATTTAAAGGTGCACTTCCGCCTCCATACTGGCGAGAAGCCCCTAAAATGTTCTGAATGCAACAAGACCTTCCGCCGGCACTCCACGCTCTGCCAACACATGAAGAAGCACCGCGGCATCCGCAACCACGTGTGCAATATTTGCAACAAGGCCTTCTACGAAGTCTCCAAGCTTAACGCGCATATGAGGGTACATACTGGTGAACGTCCATTCGAGTGCCAGTTCTGTGAGCGTCGTTTCGCGCAGCAATCCGCGCTGATCTACCACCGACGTACACACACTGGAGAAAAACCATATCACTGCAAGCTATGCTCCGCGCGCTTCACTACCTCCTCAGCGAGGAACAACCACATGGTCACACACACGGGGAACAAGAGGTTCGTGTGCCCGGTGTGCTTCAAAGGCTGCACGTCCCGCGCGGAGCTCCGCGTGCACTCCACCAAGCACACCGGCGAGAAGCTGTTCGGCTGCTCGCTGTGCTCCGCGCGGTTCAGCTCCGCCTCCTACCTCGCCGTGCACCGCCGCCACCACACGGGCGAGCGCAAGTACAACTGCAACGTGTGCGGGAAAGGTTACATGGAATCCAACTCCTATAAAAAACACCTTAAATCCCACGAAGTCAAACCAGAAGAATCTTCCGACAGCGCAGAGACAGTGAAgggagaagaagaagaagagagcCAGCCGGCAGAAGAGCAAGAGAGTCAGCAAGAGACTGCGCAGGGACAGACGGAGGTGCCGCCTCCGCAGAAGCGATACAAGTGTGGAGTTTGCGTGAAGACTTATATGTATCTGCATAGTTTGAAGAAACACATGGCTCAACATGTGCAGccacaacaacaacaacagcagcagcagcagcaacaGCAACAACAGCAACAACAGCAGCAACAGCAGCAGCAACAACATCAACAACAACATCAACAACAACAGCAAGTGCAAGTCCAACAAGTGCAAGTGCAACAACAGCAAgtccaacaacaacaacagcaaGTGTCGGTGCAACAAGTCGGCGCGCAACTGCAACAACAAGTACTGCAAGTGGGCGGCGTGCAGCAGTTGGCGCTGCAGCAGCTCGCGCCGCAGCCCTCGCTCGTGCAgGCCGGCCATTCCCCGTACCCGGTGATATCTTCAGTCCAGTCACTGCAATTGCAGCAAACGCAGCAACAAGTTAATACGCAGCAGCCACAGCAACTGCAAGTACAGACCATACAAATACATCCCCAGCATCAGCCCATACAAATTCATGCAGTAGGCGTGCAGCAAGTGCAACAGCAACAACTTCACGTGGCCACGTCCAGCTGTCAGACTATGCTGCCCAACATACTGCAGTTGGGAGGCGGTACAGTAGCCGTGTCGGGTCTGAGCGGCGCGGATCTGGGCGGCGTCGCGCACCGCATCATCCTGCAGCCGCCGCAGCATCCCGCAGTCTACACGCTGCACCACTAG
Protein Sequence: MAAVSHLKPLQFDKICRACLQIKKDMRPLFEQLTATMLMGISKVQVSVGDGFPSQLCLQCVHQISRCHAFKEQVERNDILLREHAKLVAEEARSNEEKVLSLVPDGQYIQYIELPMNTMNSAPPLLDGLFEPLPEKNDFEETKQTDSSPASKEESALNSDEENYLQLVVFQATSSVSPGRHVCNLCHKEFKHARWLKLHMRSHSNWIKANCKKPPMCPICERTFKGPGMLKMHMRTHEHRPPKQPTCSVCQRNFPTKTLLYRHRQTHFEQKAHQCSVCEKRFYSGYALRSHMARHRGERPYVCSMCSKSFYNPTDLKVHFRLHTGEKPLKCSECNKTFRRHSTLCQHMKKHRGIRNHVCNICNKAFYEVSKLNAHMRVHTGERPFECQFCERRFAQQSALIYHRRTHTGEKPYHCKLCSARFTTSSARNNHMVTHTGNKRFVCPVCFKGCTSRAELRVHSTKHTGEKLFGCSLCSARFSSASYLAVHRRHHTGERKYNCNVCGKGYMESNSYKKHLKSHEVKPEESSDSAETVKGEEEEESQPAEEQESQQETAQGQTEVPPPQKRYKCGVCVKTYMYLHSLKKHMAQHVQPQQQQQQQQQQQQQQQQQQQQQQQQHQQQHQQQQQVQVQQVQVQQQQVQQQQQQVSVQQVGAQLQQQVLQVGGVQQLALQQLAPQPSLVQAGHSPYPVISSVQSLQLQQTQQQVNTQQPQQLQVQTIQIHPQHQPIQIHAVGVQQVQQQQLHVATSSCQTMLPNILQLGGGTVAVSGLSGADLGGVAHRIILQPPQHPAVYTLHH*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00654525;
90% Identity: iTF_00654525;
80% Identity: -