Basic Information

Insect: Notocelia uddmanniana
Gene Symbol: -
Assembly: GCA_905163555.1
Location: LR991068.1:5163768-5173269[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 1.7 1.9e+02 4.4 0.4 2 19 38 55 38 57 0.93

2 13 1e-06 0.00012 24.0 4.5 1 23 123 145 123 145 0.99

3 13 0.00071 0.081 15.0 6.8 1 23 150 172 150 172 0.97

4 13 5.4e-05 0.0062 18.5 0.9 1 23 190 212 190 212 0.99

5 13 0.00096 0.11 14.6 3.1 2 20 220 238 219 241 0.92

6 13 0.00012 0.013 17.5 0.2 1 23 247 269 247 269 0.96

7 13 1.8e-05 0.002 20.1 2.1 1 23 275 297 275 297 0.97

8 13 4.7e-06 0.00054 21.9 1.1 3 23 305 325 304 325 0.99

9 13 4.1e-05 0.0047 18.9 0.4 1 23 331 353 331 353 0.96

10 13 2.1e-06 0.00024 23.0 0.9 1 23 359 381 359 381 0.99

11 13 2.9e-05 0.0033 19.4 4.6 1 23 387 409 387 409 0.98

12 13 2.6e-06 0.0003 22.7 1.0 1 23 415 437 415 437 0.99

13 13 0.00019 0.022 16.8 1.2 1 23 443 465 443 465 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	1.7	1.9e+02	4.4	0.4	2	19	38	55	38	57	0.93
2	13	1e-06	0.00012	24.0	4.5	1	23	123	145	123	145	0.99
3	13	0.00071	0.081	15.0	6.8	1	23	150	172	150	172	0.97
4	13	5.4e-05	0.0062	18.5	0.9	1	23	190	212	190	212	0.99
5	13	0.00096	0.11	14.6	3.1	2	20	220	238	219	241	0.92
6	13	0.00012	0.013	17.5	0.2	1	23	247	269	247	269	0.96
7	13	1.8e-05	0.002	20.1	2.1	1	23	275	297	275	297	0.97
8	13	4.7e-06	0.00054	21.9	1.1	3	23	305	325	304	325	0.99
9	13	4.1e-05	0.0047	18.9	0.4	1	23	331	353	331	353	0.96
10	13	2.1e-06	0.00024	23.0	0.9	1	23	359	381	359	381	0.99
11	13	2.9e-05	0.0033	19.4	4.6	1	23	387	409	387	409	0.98
12	13	2.6e-06	0.0003	22.7	1.0	1	23	415	437	415	437	0.99
13	13	0.00019	0.022	16.8	1.2	1	23	443	465	443	465	0.98

Sequence Information

Coding Sequence: ATGTATGAGGAGTGTTGTCGTACCTGCATGAGCAATATTTCGTCAGTTAAAATAATTGATATTTTCGCTTCTAATGCTTCTATAGACAGTGAAGATGGATTGCCAAAAAATGTATGTGATAGTTGTTATACATCTTTAAAGAACTTTTACGAATTCAGAAAACATGCTGAAGAAATTGATGTAAGATTACGCAACACTGAAACCgaagattttgaaataaaacttgaagaATCTCCACCTAGtgatataaaagaagaagaacaAGAACATGATCAAATTTCCTCACATGATTACTCTTTGAGTTCAGAATTTGTCCATGAAGTGCCAAACTTACTGCAACACAATAAAGAAAGTtcaagtacattttttaaatgtgaCGTATGTGACAAGAAGTTTAGAAAAGAATCTAAACTAAAAAGGCACAAGCGCACACATGAAAATGGTGCATACACTTGTAACCTGTGTTCGAAAACATTTAAACACCATTCCAAATTCGTGAAGCACTTGATTCTACACAATCAGAGTGAAGACCGAAGTGAAATAATAGACCAAAATGAAAACCAAAGTTTTAAATGCAATATATGTTCCGCAGTATTCAAATCCATGCAGTCATTGTCAGGTCATATGCGGAAACACAGTAACAAAGACCGTATCCTAAGCTGCGCTGTATGCGACAaagtatttaagaaaataagcCACTTGAAACGACATGAGCTCTGCCATGACGCAAATAGGCCTTACAAATGTCCTATTTGTCCTAAGTCGTTCACGTCGGAGATTATTCTCAAGGAACATGAGAACAAGCATGCGGGCGTCAAGAGTCATGTTTGTCCGTTTTGCTCAAAAGCATTTTCTTACTTTTCAACATTGAACACTCACATCAAGATACATACGAAAGATAAGACATTGTTATGTCCATTTTGTGGAAAGAAGTTTGATTCTGGTACGAATCTGACTCAGCACATGAGGAGGCATATGGGTCTGAAGATGTTTGCTTGCAGTTTATGCCCCAAACGATTTGTCAGCAAAGGTGAGCTCAAGTCCCACGGTACTACGCACACGGGCGAACGAGCGTACACATGTGAGCAATGTGGGGCGACATTCACTAAGCGCAGCTCACTGGGAAAGCACATGCTCCGGCATCGTGGGATTAAGCCGCATCAATGCGACGCATGCCCTAtgaaGTTCACAAGCAAGGACCATCTAAAGCGGCATTACCGCATACACACTGGCGAGAAACCGTATCGTTGTACGCTGTGTGAGCGCGCCTTTACGCAGAGCAACGATCTAGTCAAACATCGACGCATACATCTTGGGGATATGCTTTACAAATGTGTCCAATGCTCTGAGAGTTTTCGACTGAAGACCGAGCTACAGCAACACATATCGCAGCACTTCGCGTCTCAACTGGCTTCAGTAGTCAATTCATTGGATGAACCGAAAGACAAACGGATAGATTATATGGAGCAGATGACTACGGTTGCGGAAGCCAAATGTGATGCTATGTTGGAaattaataaatga
Protein Sequence: MYEECCRTCMSNISSVKIIDIFASNASIDSEDGLPKNVCDSCYTSLKNFYEFRKHAEEIDVRLRNTETEDFEIKLEESPPSDIKEEEQEHDQISSHDYSLSSEFVHEVPNLLQHNKESSSTFFKCDVCDKKFRKESKLKRHKRTHENGAYTCNLCSKTFKHHSKFVKHLILHNQSEDRSEIIDQNENQSFKCNICSAVFKSMQSLSGHMRKHSNKDRILSCAVCDKVFKKISHLKRHELCHDANRPYKCPICPKSFTSEIILKEHENKHAGVKSHVCPFCSKAFSYFSTLNTHIKIHTKDKTLLCPFCGKKFDSGTNLTQHMRRHMGLKMFACSLCPKRFVSKGELKSHGTTHTGERAYTCEQCGATFTKRSSLGKHMLRHRGIKPHQCDACPMKFTSKDHLKRHYRIHTGEKPYRCTLCERAFTQSNDLVKHRRIHLGDMLYKCVQCSESFRLKTELQQHISQHFASQLASVVNSLDEPKDKRIDYMEQMTTVAEAKCDAMLEINK*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -