Nudd048094.1
Basic Information
- Insect
- Notocelia uddmanniana
- Gene Symbol
- -
- Assembly
- GCA_905163555.1
- Location
- LR991076.1:6038094-6051853[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 26 0.016 1.8 10.8 2.0 1 23 85 108 85 108 0.95 2 26 6.8 7.8e+02 2.5 0.1 2 23 134 156 133 156 0.85 3 26 0.033 3.8 9.8 4.2 2 23 180 201 179 201 0.97 4 26 0.0019 0.22 13.7 0.5 1 23 205 227 205 227 0.97 5 26 0.008 0.92 11.7 0.5 1 23 234 257 234 257 0.97 6 26 0.0032 0.37 13.0 1.3 2 23 265 287 264 287 0.95 7 26 9.9e-06 0.0011 20.9 0.9 2 23 293 315 292 315 0.97 8 26 2.7 3e+02 3.8 1.0 1 23 321 344 321 344 0.89 9 26 2.2e-05 0.0026 19.7 1.6 1 23 350 373 350 373 0.98 10 26 7.2 8.2e+02 2.4 0.0 2 23 498 520 497 520 0.91 11 26 0.43 49 6.3 0.1 2 23 543 564 542 564 0.96 12 26 1.2 1.4e+02 4.9 0.7 1 23 568 590 568 590 0.91 13 26 0.011 1.2 11.3 1.3 2 23 596 618 595 618 0.96 14 26 0.22 25 7.2 3.2 2 23 626 648 625 648 0.94 15 26 3.6e-05 0.0041 19.1 1.5 1 23 655 678 655 678 0.98 16 26 0.13 14 7.9 1.5 1 23 684 706 684 706 0.95 17 26 0.029 3.3 10.0 1.3 1 23 771 794 771 794 0.90 18 26 0.14 16 7.8 0.0 2 23 824 846 823 846 0.91 19 26 0.097 11 8.3 0.1 2 23 869 890 868 890 0.96 20 26 6.7e-05 0.0077 18.2 0.6 1 23 894 916 894 916 0.98 21 26 0.00066 0.075 15.1 0.3 2 23 922 944 921 944 0.96 22 26 0.13 15 7.9 0.5 2 23 952 974 951 974 0.93 23 26 0.00011 0.012 17.6 1.1 2 23 982 1004 981 1004 0.95 24 26 0.00058 0.066 15.3 2.3 1 20 1010 1029 1010 1032 0.92 25 26 7.1e-07 8.1e-05 24.5 0.8 1 23 1038 1060 1038 1060 0.99 26 26 0.0021 0.24 13.6 2.2 1 23 1066 1089 1066 1089 0.96
Sequence Information
- Coding Sequence
- ATGGTAGATGCTCGGCCCCGTCGCCAATTACGCCTCCGCCAGGAGCGATATGACGGAAATAATAGGCAATATCATGCTAGCGACACCGGAGCGACTAAAAAACGGAAAAAGGCATTAAAGGAGGAAAATACCGCTCCTAAAACGGTGTTCCGAGAAAAACACATGCCCGAGATGCAGAAACAGTGGCACAACCTGACTACCTTGCTCAAGTACTCGAATGCGACACCGTTTAAGGACAGGAACGATGCGGGTTACATATGCGCTTACTGTTTCAAAACCTATCCCGACCCAGAGGTCCTCCGGCACCACACGCAACACGATCACGTCAAGGAAAAACCAACTTACAAAGCCGGTTCAGGCATGAGCAGCTTCGTAGCTTTCCTCGACGTTGTCGACCTAAAATGCACTCTCTGCGACATGTCTATCGATAACCTAAAAGAACTCCCCGAGCATCTAGTCAAAGTTCACGAGAAAAAGTACTTTCTCGGCGTCACAGATTACTTCCAGCCATTCAAATTGACTAACGAGCAACAGATCAAATGCTGCCTGTGCACCGAATCATTTCACAACATGAAGTTGCTCATGCAACATATGAACGTCCATTACAGGAACTTCATCTGCACTACTTGCGGAGCAGGCTTTGTGAACAGCTTCAGACTTAACAGGCATGAGACTACGCACGGAAAGAAAAAGTCCAGCTTTCCTTGTCGGCATTGCGGGCAGGTCTTTGCAGCAGAGTCGAAGAAGAAAGCCCATGTCAATACTGAACATAAAGGCATAGCTGGGGATAGCGTGTGTCAAATATGTAAGGCGCGGTTTAAAAACTACTATCAGAAAACTAGGCATATGATGCAAGTGCACAATGTTGAGGGTATAAAGTGTGATATGTGtgaaaaaaagtttaatttaaagTCAAATCTCATGTTACACATGAGGAGTGTACATCTAAAGGAAAGACCTTACGAATGCTCAGTCTGCAGTATGGGTTTCTTTATTAAAAGGCACATGCTAGGGCATTATATGGCGACACATACTAACGAGAGGAAGTTTAAATGCGACGTTTGTGGTAAAGCATACGCTACTCAGAACAGCAGGCGAAAACATATGAAGAAAAATCACGGTATTTCTAAAAGTGTCGCAAGAAGCACTAGGATTATCACAAGCGATGCACCTAATCAAAGAACGGGTATGACGAAGCGTGCAAGCTCAATGAACTTGTTACGATTGTCTGATGTTGATCCCGGGGATCCCAGTGACACAAAGAAGAATTTCCACAATGTAGAACAGATTTTACTCTATTCTAATGCGAGCCCAATAAGAGCGCACAATCTGCGGGGCTACATGTGCGTTATCTGCTGCGAGCAGTTCATCGAGCCCCAGAAACTAAAAGAACATTTCTTAGAACAACACGACGTGGGACTGAGGCACAAGTCTGTCAAGCCAGGCAATTTTTTCACCACCCCTATTGTGAAACTAGACATTACGCATCTGAACTGCGCTCTGTGCGACACTGATTTGGACTCGCTTCAAGATTTAATGCTCCATTTGATAGAGGTGCACAATAAAACACTGTACATGAATGTTCGGAGTCAGGTGCTGCCTTTCAAATTCGATACGCCTGAGTTGCGCTGCGCGATCTGCTCAGCGGAGTATGTCAGCTTCAAAGTACTCCAGGAACACATGAATGGGCACTTCATGAACTATATATGTCATATTTGCAACGCTGGTTTCGTTCTCGGGCGGTCACTGAGATTCCACATCAGTCGGCATGACAATGTAAACGTGAAATGTTCTGAATGCGAGAAAATCTTTATTAATGCGCATAGGATGCGCGCTCACTTTAAGCGTGCACACATGGGCTTAAACGTACCGAACAAATGCCATTACTGTAAATTAAAGTTTAAAGACTATGAGAAAAAGGTGGAGCACATGGTTAAAGAGCACGGAGTTCCCTCAGCAGTCTTTAAATGTGCGGCGTGTGACCGTACTTTTGTCAACCAAAGGGCACTCACGCGACATACGAGAAAATATCATCTTTTGGAGAAAAACTACTTATGCCCTTACTGTGACATGAAATTTTACTGCTCATCTGAACTGGATGGTCATTTACTAAAACATACCGGTGTCGCACGAAGAACTAGGATTATCACGATCGATGCAACTAATCAAAGAACGATGAAGCGTGCAAGATCAGCCGTCTTACGATTGTCTGGTGTTGATCCCGGTGAGACGAAGAAGAATCTCCACAATCTAGGTCAGATTTTACTCAATTCTAATGCGAGCCCAATAAGAGCGTACGATCTGCGGGGCTACTTGTGTGCTCTATGCCCCAAGCAGTTCCCTGAGCCgcataaactaaaaaaacatttcttaCAACAGCACAGCGACGCCGGACTAATTAGGCGCTTGTCGGTCATGTCAGGCTCTTTAATTAACACCCATGTGGTCAAACTAGACATTACGCTTCTGAACTGCGCTCTGTGCGATACTGGTTTTGACTCACTCCAAGATTTAATGCTCCATTTGATAGAGGTTCATAATAAAACACTGTACATGAATGTTCGGAGTCAGTTGCTGCCTTTCAAATTTGATACGCCTGAGTTGCGCTGCGCGATCTGCTCAGCGGAGTATGGCAGCTTTAAATTACTCCAGCAACACATGAATGGGCACTTCAGGAACTATATATGTCATATTTGCAACGCTGGTTTCGTTGTCCAGCGATTGCTCAATAACCACATACGTCGGCATGGCGACGAGAATGTGGAATGCACTGAATGCGGGAAAATCTTTATCAATACGCAAAAGATGCGCGAACATGTGAGACGTGTACACATAGGATTAGACAAACGAAACAAATGCCAATACTGTAACGAAAGGTTTGCAGACTATTGGAAGAAGGTTGACCACATGGTCAAGGAACACGGAGTTCCCTCGGTAGTCTTGAAATGTGGGGCGTGTGACCGTACTTTCGCTAATCAAAGATCATTGACGCGCCATACGAAGAAAGATCATCTCATGGAGAGGAAACACAAATGTCCATACTGTGACATGAAGTTTTACAGCACAAGTGCTCTAAAGAACCATTTACCGAAACATACGGGTATAAAGATGTTCAAATGCGAAATTTGCTCCAAAGAGTATGCCAGGAAGTCAACCCTAACTGAGCACATGCGTATACATACAGATAACAAGAGATTTGCCTGTGTTTACTGCAGTATAGCTTTCACACAGAAGTGCAGCTTGAAAGGACATTTGCGGTCCAAGCACAATGAAGTcctttaa
- Protein Sequence
- MVDARPRRQLRLRQERYDGNNRQYHASDTGATKKRKKALKEENTAPKTVFREKHMPEMQKQWHNLTTLLKYSNATPFKDRNDAGYICAYCFKTYPDPEVLRHHTQHDHVKEKPTYKAGSGMSSFVAFLDVVDLKCTLCDMSIDNLKELPEHLVKVHEKKYFLGVTDYFQPFKLTNEQQIKCCLCTESFHNMKLLMQHMNVHYRNFICTTCGAGFVNSFRLNRHETTHGKKKSSFPCRHCGQVFAAESKKKAHVNTEHKGIAGDSVCQICKARFKNYYQKTRHMMQVHNVEGIKCDMCEKKFNLKSNLMLHMRSVHLKERPYECSVCSMGFFIKRHMLGHYMATHTNERKFKCDVCGKAYATQNSRRKHMKKNHGISKSVARSTRIITSDAPNQRTGMTKRASSMNLLRLSDVDPGDPSDTKKNFHNVEQILLYSNASPIRAHNLRGYMCVICCEQFIEPQKLKEHFLEQHDVGLRHKSVKPGNFFTTPIVKLDITHLNCALCDTDLDSLQDLMLHLIEVHNKTLYMNVRSQVLPFKFDTPELRCAICSAEYVSFKVLQEHMNGHFMNYICHICNAGFVLGRSLRFHISRHDNVNVKCSECEKIFINAHRMRAHFKRAHMGLNVPNKCHYCKLKFKDYEKKVEHMVKEHGVPSAVFKCAACDRTFVNQRALTRHTRKYHLLEKNYLCPYCDMKFYCSSELDGHLLKHTGVARRTRIITIDATNQRTMKRARSAVLRLSGVDPGETKKNLHNLGQILLNSNASPIRAYDLRGYLCALCPKQFPEPHKLKKHFLQQHSDAGLIRRLSVMSGSLINTHVVKLDITLLNCALCDTGFDSLQDLMLHLIEVHNKTLYMNVRSQLLPFKFDTPELRCAICSAEYGSFKLLQQHMNGHFRNYICHICNAGFVVQRLLNNHIRRHGDENVECTECGKIFINTQKMREHVRRVHIGLDKRNKCQYCNERFADYWKKVDHMVKEHGVPSVVLKCGACDRTFANQRSLTRHTKKDHLMERKHKCPYCDMKFYSTSALKNHLPKHTGIKMFKCEICSKEYARKSTLTEHMRIHTDNKRFACVYCSIAFTQKCSLKGHLRSKHNEVL*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -