Nudd048246.1
Basic Information
- Insect
- Notocelia uddmanniana
- Gene Symbol
- -
- Assembly
- GCA_905163555.1
- Location
- LR991076.1:7340898-7354034[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 1.6e-05 0.0018 20.2 0.2 1 23 238 260 238 260 0.98 2 17 0.5 57 6.1 0.8 2 23 267 288 267 288 0.97 3 17 3.5e-06 0.00041 22.3 0.4 2 23 295 316 294 316 0.97 4 17 0.0018 0.2 13.8 5.2 1 23 322 344 322 344 0.98 5 17 0.004 0.46 12.7 0.9 1 23 350 372 350 372 0.97 6 17 3.2e-07 3.6e-05 25.5 3.2 1 23 378 400 378 400 0.99 7 17 0.0029 0.34 13.1 6.5 1 23 406 428 406 428 0.98 8 17 0.0009 0.1 14.7 0.3 1 23 434 456 434 456 0.98 9 17 5.9e-05 0.0068 18.4 1.2 1 23 462 484 462 484 0.98 10 17 2.7e-06 0.00031 22.6 4.6 1 23 490 512 490 512 0.99 11 17 0.0027 0.31 13.2 4.0 1 23 518 540 518 540 0.97 12 17 3.7e-06 0.00042 22.2 4.8 1 23 546 568 546 568 0.97 13 17 0.027 3.1 10.0 1.9 1 23 574 596 574 596 0.98 14 17 4.2e-05 0.0048 18.9 4.2 1 23 602 624 602 624 0.98 15 17 0.00018 0.02 16.9 3.1 1 23 630 652 630 652 0.96 16 17 6e-05 0.0068 18.4 1.1 1 23 658 680 658 680 0.97 17 17 6.3e-05 0.0072 18.3 1.0 1 23 690 712 690 712 0.99
Sequence Information
- Coding Sequence
- ATGAACGTGGGGCACTCGTGCCGCTGCTGCCTGTGGCGAGCTCCGGACAAGGACCTGACGACGCCGTACACACATCTCGGCGCAACAGAGATATATTCCAATATGCTCAAGGAGTGCTTTGACATACATCTAATACTCGGCAGTGATGGCCCAGCGGGGATCTGTGATGTGTGCGTGGGCCGGCTGCAAGATGCAAGCGACTTCAAGCTGCAAGTGCAGCGCAGCCAGATAGAGCTGCAGGCGCTGCTGCAGGGAGCTCTGCAGGTTAAAGAGGAACATCCAACAGTCAAGTCAATAATGGAGGATGGAGATGGTTCCAACGAGGAGCCTGTGTTGTGTGAAGAGGCCCCAGTCAGGACAGAGACGGAAGATGAGGATGTGACAAGTGATGAACAGGGACAGGAATTATCACGTTCAGACGAGGCGCGAGCAGCGACGGCGGAGATGTCGTCTGACGACGACGAGGACTGCATATCGCTCGCACCGGTAGATGCGTCGGGCGATAGGGCAGAGCCGGCACGGCCTGTGTCCGCGCGCGCCAGACAACAGCTCGCCTTGCGGTGTTCCGTGAGGCTCGAGCGCCTCCGCGGCGATGAGGCGCCGCGCGCGAGCCAGACGCGGCGAGCGTCATCGCGCCGCGGCCCGAGCCCCGCCGCGAGTACGAAGGACGCGCCTGACGACACCGCCGGCCTCCGCGCCGAGGAACAAGCGTACACCTGCGACACTTGCGGGCAACTCTTCACAGACAAGCCCACGTTAATCAAGCACATACAAATACACGAGGGCCCTAAGCGTGCTCAGTGTGATATTTGTTATAAAACTCTCCTAAATAAGTATGTTTTGAAGGAACACAAAAAGATCCATACCGGGGAAAAACCACTCACCTGTGATGAATGCAACAAGCAATACCGGCAGAAAGGTGCTTTAATTTCACATATAAGGACTCACACTAGAGGGAAATCATATAGTTGTAGAGAATGTAACAGAACATTTACGAATTTAACACGTTTGCACACGCACAGGAGATTGCACACTGGAGAAAAATCGTATAGTTGTAGAGAATGTAGTAAACAATTTCAAAGTTTAGCAAGTCTATGGCAGCATAAGACAATTCACACCGGTGAGAAACCATTCACCTGTAATGAATGTAACAAGCGATTCCGACACAAAGGTACGTTAATTGTACATATAAGAACTCACACTGGAGAGAAACCATATAGTTGTACAGAATGTAACAGAACATTCGCGCATATAAAAAGTTTGCACACGCACAGGAGGTTTCACACTGAAGACAATCCGTACAGTTGTGGAGAATGTAGTAAACAATTATCAAGTTCAGCAGCTTTATCCCAGCATAAGAGAATTCACACCGGAGAGAAACCGTATAGTTGTAAAGAATGTAGTAAACAATTTACTAGTTCACCAGCTTTATTTCTGCATAAGAGAATTCACACTGGAGTGAAACCATATCGATGTAAAGAATGCAACCGACAATTTACAAGAAAGGATCATTTAAATACACACGAGAGAATTCATACTGGAGAGAAACCATATAGTTGTAAAGAATGCAACaagcaatttagaaaaaaatggtgTTTAGATGTACATAGAACAATTCATTCCGAAGAGAAGCCATATAGTTGTACAGAATGCGACAAGCAGTTCAGACGAAAGGACCatctaaataaacataaaatgttACACGTTGCAGAGAAACCATTCAGTTGTGACGTATGTAATAAGCTATTTTCTGGGATAAGACGCTTAAatactcacaaaaaaaaacactccgaAGAGAAGCTATACAGTTGTACAGAATGCAATAAGCAGTTCAAACGAAAGACCCGTCTAAATACACATAAAAGAGTTCACACTGGAGAGAAACCGTTCAGTTGTGACGTATGTAACAAGCGATTTTCTGAGAAACGTTACTTAAACAAACATAAAGAATATCACACTGGAGAGGAACCTTACAGTTGCGATGAGTGTAACGAGCGTTTCGTAAAAAAAGGTCTGTTGAATAAACATAAAAAGGAACATATAACTTTGCTCACCGAGGATCAACCCTATGTCTGTGATTACTGTGAGAACCTATTTACAACAAAAGATAGTTTGATTACACATAGAAGAATGCATACTGGAGACTAA
- Protein Sequence
- MNVGHSCRCCLWRAPDKDLTTPYTHLGATEIYSNMLKECFDIHLILGSDGPAGICDVCVGRLQDASDFKLQVQRSQIELQALLQGALQVKEEHPTVKSIMEDGDGSNEEPVLCEEAPVRTETEDEDVTSDEQGQELSRSDEARAATAEMSSDDDEDCISLAPVDASGDRAEPARPVSARARQQLALRCSVRLERLRGDEAPRASQTRRASSRRGPSPAASTKDAPDDTAGLRAEEQAYTCDTCGQLFTDKPTLIKHIQIHEGPKRAQCDICYKTLLNKYVLKEHKKIHTGEKPLTCDECNKQYRQKGALISHIRTHTRGKSYSCRECNRTFTNLTRLHTHRRLHTGEKSYSCRECSKQFQSLASLWQHKTIHTGEKPFTCNECNKRFRHKGTLIVHIRTHTGEKPYSCTECNRTFAHIKSLHTHRRFHTEDNPYSCGECSKQLSSSAALSQHKRIHTGEKPYSCKECSKQFTSSPALFLHKRIHTGVKPYRCKECNRQFTRKDHLNTHERIHTGEKPYSCKECNKQFRKKWCLDVHRTIHSEEKPYSCTECDKQFRRKDHLNKHKMLHVAEKPFSCDVCNKLFSGIRRLNTHKKKHSEEKLYSCTECNKQFKRKTRLNTHKRVHTGEKPFSCDVCNKRFSEKRYLNKHKEYHTGEEPYSCDECNERFVKKGLLNKHKKEHITLLTEDQPYVCDYCENLFTTKDSLITHRRMHTGD*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -