Basic Information

Insect: Notocelia uddmanniana
Gene Symbol: -
Assembly: GCA_905163555.1
Location: LR991078.1:14955263-14960044[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.00012 0.013 17.5 0.7 3 23 95 115 94 115 0.97

2 13 9.1e-07 0.0001 24.1 5.5 1 23 121 143 121 143 0.99

3 13 3.3e-05 0.0038 19.2 0.8 1 23 149 171 149 171 0.98

4 13 3.4e-07 3.9e-05 25.4 2.1 1 23 177 199 177 199 0.99

5 13 1.2e-06 0.00013 23.8 2.4 1 23 212 234 212 234 0.97

6 13 9.8e-06 0.0011 20.9 0.9 1 23 240 262 240 262 0.95

7 13 0.0046 0.53 12.5 1.7 1 23 268 290 268 290 0.96

8 13 2.1e-06 0.00024 23.0 0.9 1 23 296 318 296 318 0.96

9 13 1.4e-06 0.00016 23.5 0.5 1 23 324 346 324 346 0.98

10 13 5.2e-06 0.00059 21.7 0.4 1 23 352 374 352 374 0.98

11 13 2.8e-06 0.00032 22.6 1.2 1 23 380 402 380 402 0.97

12 13 6e-06 0.00069 21.5 2.3 1 23 408 430 408 430 0.98

13 13 6.6e-05 0.0076 18.3 0.3 1 23 436 458 436 458 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.00012	0.013	17.5	0.7	3	23	95	115	94	115	0.97
2	13	9.1e-07	0.0001	24.1	5.5	1	23	121	143	121	143	0.99
3	13	3.3e-05	0.0038	19.2	0.8	1	23	149	171	149	171	0.98
4	13	3.4e-07	3.9e-05	25.4	2.1	1	23	177	199	177	199	0.99
5	13	1.2e-06	0.00013	23.8	2.4	1	23	212	234	212	234	0.97
6	13	9.8e-06	0.0011	20.9	0.9	1	23	240	262	240	262	0.95
7	13	0.0046	0.53	12.5	1.7	1	23	268	290	268	290	0.96
8	13	2.1e-06	0.00024	23.0	0.9	1	23	296	318	296	318	0.96
9	13	1.4e-06	0.00016	23.5	0.5	1	23	324	346	324	346	0.98
10	13	5.2e-06	0.00059	21.7	0.4	1	23	352	374	352	374	0.98
11	13	2.8e-06	0.00032	22.6	1.2	1	23	380	402	380	402	0.97
12	13	6e-06	0.00069	21.5	2.3	1	23	408	430	408	430	0.98
13	13	6.6e-05	0.0076	18.3	0.3	1	23	436	458	436	458	0.97

Sequence Information

Coding Sequence: ATGCAGTGTGGAGAGACCAGACTGGTGTCTCCGAAGCAGGAGTCTATGGAGGCTAGCATGAGGGAGCCCGGAGTGCTGCAGCCACATGACCTGGTGTTTACGGAACACATGTGCATCACGGTGGAGGCGGAGTTCGTCGGCGCGGGGGTGAAGGAGGAGCGCAACAGCGGGAGCGAGAGCGCACGCGCGAGTCAGGGCGACAGCGCGCTTCACACGGAACATGAGCCATATGAGCAAGGTCCGCTCGgggcgcgcgccgcccgcgcgcgGGAGCCCGTCGCGTGCGCGCTGTGCGCGAACACGTTCAAGCATGCGAGCAGCCTGAAGGCGCACATGCGCATACACACCGGACAAAAGCCCTATCCCTGTAACATGTGCCACAAACGCTTCAGGAAATCGAGTACTTTGAAGAAACACGTCCGGACTCACACCGGGGAGAAACCTTTCCAGTGCGGGCTGTGTGACAAACGGTTCCGGGTGTTGGACACCCTGAGCAAACACGAGCGGCTTCACACGGGAGAAAAACCATATTCCTGCAATATATGTAAACAAGAGTTTACGCAATCGTCGAGTTTAAGAAGACATGAGCGGACTCATCCGGAAGAATTCCCAGACGCCCCTCCGCTCCTCACTCACCCGTGCCGAGTGTGTGACAAGCGCTTCGAGTCATCGAGTGATTTAAAGAGACACGAACGGACTCACACAGGAGAGAAACCATTCTTGTGCAATATATGCAACAAGAGCTTTGCACAAATGGTAACGTTGAGGCAACACCGGCGGATTCACACTGGAGAAAAACCACATTGTTGCGGAGTGTGCACAATGGCGTTCGCAGACCTGAGAACTCTGAAGGATCACGAGCGGATCCACACGGGAGAAAAGCCTTACGTCTGCAAAGTGTGCAACAAAAGCTTTTCTCGGTTGAACACATTAAGGAAACATGAAGCAATTCATACGGGCGAGAAGAAATTTTCATGCGATATATGCAAAAAGCGGTTCAGGCAATCGGGTGCGTTAAACTTGCATGTCCGAATACACACAGGAGAGAAACCTTACGTTTGCGGAACGTGTCAAAAGGAGTTTGCGCGACTTGATTCTCTGAAGAAACATGAACGCATCCACACAGGAGAGAAGAGATACTGCTGTGGAGTTTGTAACAAGGAGTTTATAGATTCCGGCAACTTAAAGAAGCACGAGCGCGTTCACTCCGGGTGCAAACCATACGCGTGCGACACGTGCAAGAGAGATTTTACAGACTCTAGCCATTTGAAGAATCATGAACGAGTTCACACAGGTGAAAAACCATACGCTTGTGATACTTGTAATAACGCGTTTGCAGTATCGAGTACTTTAAAGAAACATCAACAAATCCACTCCGGAGAATCAAGCAGACCATAA
Protein Sequence: MQCGETRLVSPKQESMEASMREPGVLQPHDLVFTEHMCITVEAEFVGAGVKEERNSGSESARASQGDSALHTEHEPYEQGPLGARAARAREPVACALCANTFKHASSLKAHMRIHTGQKPYPCNMCHKRFRKSSTLKKHVRTHTGEKPFQCGLCDKRFRVLDTLSKHERLHTGEKPYSCNICKQEFTQSSSLRRHERTHPEEFPDAPPLLTHPCRVCDKRFESSSDLKRHERTHTGEKPFLCNICNKSFAQMVTLRQHRRIHTGEKPHCCGVCTMAFADLRTLKDHERIHTGEKPYVCKVCNKSFSRLNTLRKHEAIHTGEKKFSCDICKKRFRQSGALNLHVRIHTGEKPYVCGTCQKEFARLDSLKKHERIHTGEKRYCCGVCNKEFIDSGNLKKHERVHSGCKPYACDTCKRDFTDSSHLKNHERVHTGEKPYACDTCNNAFAVSSTLKKHQQIHSGESSRP*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -