Nudd048672.1
Basic Information
- Insect
- Notocelia uddmanniana
- Gene Symbol
- -
- Assembly
- GCA_905163555.1
- Location
- LR991076.1:13274359-13289312[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 9.7e-05 0.011 17.7 0.6 1 23 180 202 180 202 0.98 2 22 0.019 2.2 10.5 2.9 1 23 208 230 208 230 0.96 3 22 0.00016 0.018 17.0 5.9 1 23 236 258 236 258 0.98 4 22 0.0013 0.15 14.2 2.3 1 23 264 286 264 286 0.96 5 22 0.03 3.5 9.9 2.8 1 23 294 316 294 316 0.96 6 22 6.5e-07 7.4e-05 24.6 1.1 1 23 322 344 322 344 0.98 7 22 2.6e-05 0.003 19.5 0.3 2 23 351 372 350 372 0.95 8 22 3.9e-06 0.00045 22.1 2.1 1 23 378 400 378 400 0.97 9 22 0.033 3.8 9.8 2.8 1 23 406 428 406 428 0.98 10 22 2.4e-06 0.00027 22.8 1.9 1 23 434 456 434 456 0.97 11 22 0.00026 0.03 16.4 0.6 1 23 624 646 624 646 0.98 12 22 0.11 13 8.1 2.9 1 23 652 674 652 674 0.96 13 22 0.003 0.34 13.1 6.2 1 23 680 702 680 702 0.98 14 22 0.0026 0.3 13.2 3.6 1 23 708 730 708 730 0.95 15 22 0.5 57 6.1 3.5 1 23 738 760 738 760 0.96 16 22 8e-06 0.00092 21.1 0.7 1 23 766 788 766 788 0.98 17 22 4e-05 0.0045 19.0 0.4 2 23 795 816 795 816 0.96 18 22 3.2e-05 0.0036 19.3 1.4 1 23 822 844 822 844 0.97 19 22 0.00099 0.11 14.6 3.7 1 23 850 872 850 872 0.98 20 22 3.6e-06 0.00041 22.2 1.0 1 23 878 900 878 900 0.97 21 22 1e-05 0.0012 20.8 1.4 2 23 906 927 905 927 0.96 22 22 1.9e-06 0.00021 23.1 5.7 1 23 931 953 931 953 0.98
Sequence Information
- Coding Sequence
- ATGTCTGAGGCTATAAAAGAGTTAGATTTAGAAACAAACTCGATAAAGATAGAAATAGTGTTAGTTAAACAAGAATCTGATATTGAAGATAGTGGAATAAGTTTGAAAGAGGAGGCAATAGAGGAAGAAACAGAATCGCCAGGACATGTGGAGATGGATGTGGTGTCTATTAAGGAAGAGCCATGGGACAGTGTGAGCGAGGCTCAACATGCAGGCTTGTATAGCGGACACAGGGTTGACGAAGGTCAGGTGCTCGAGACGGAGTCAGAACAGCAGCCAAATGTGCCGATGGTGAAAAttacatcatttgGAGAAGCATCGACATTCACAGAAGAGTTCAGACGAAGTGACACGGAAGCTGTGCCAAAAACGGGGCATTTAAACTGGGATACCATAGACAGCAAAATGATGGCTCAAATATCCAGTCTATCTACTCACATGCATGAAAACACACTGTTGAGAAGAACTTTCAAGTccagaaagaagaaagaaaaagtcACTGGTTCTATTAACGATCAGactgaaaacaaagaaaaatacaTATGTGACATTTGCAACAAAGAGTTTTCAATGAAGAAGTATTTGATCGGTCATATCAAGTATCACATGTACAGAAAACCATTCTATTGCAGCATTTGCGGTAAGAAATTTACGTGTCAGACTTATGCGACCGTGCACGAGCGGATTCACACAGGCGAGAGACCTTACAGTTGCAGCATCTGCCAGAAACCCTTCAGGTGTTCCAGCCACTTGAACAAGCACCAACGCATTcatacacaagataaaccgtATTCTTGTGGGGTTTGTAACAAGCAATTCAAAGAAAGAACACATTTAAAGCTCCACGAGCTTCTACACGAAGGAGAAAAAGCTAAACAGCACGCTTGCAAAATTTGCCCAAAGAAGTTTCTACACCTGTACAAATTGGCTATACACGAGCGCTCTCACACTGGCGAGAAACCATTCGTCTGCAACACGTGTGGCGAGGCCTTCAAACAGAAGTTCCAACTTAACAGCCACATGCGATTACACACCGGACAGGAGCCGCTTGTGTGCGAAACGTGCGGGAAACATTTCGTAACCAAAGCAGACTTGGCTAGACATGAACTCATTCACCTAAAAAATAAACCATTTGCCTGCGACATATGCGATCGCCAGTTTACACAAAAATCACACTTGACTAGTCATAGACTCATTCACACTGGTGAAAAACCCTTTTCGTGTGACATGTGCATAAAGACCTTCAGCTGCAAAGCTTCGTTACGTGTCCATCGACGAGTTCATACTAACGAGAGGCCTTTCGCTTGTAAAGTGTGCGGGAGGCGTTTCAAGCAGCGAGGGCAAATGAAAAGGCATCAACTGACTCATCGTGAAAGAGAGCTGGAAGTAGTGCTAGTTAAGGAAGAATTAAACCTTGAAGATAGAGGAATATGTGTTAAAGAGGCGGCAAAAGAGGAAAAATCAAAATCACCGGGACATGTGAAGATGGAAGTAGTGTGTGTAAAGGAAGAGGCGTGGAACAGCGTGGGCGGAGCTCAGCAAGCAGGCTTATTTAGAGGAGATGAAGTTGAACGGGACCTGGTGCTCGGGTCGGAGTCGATGCAGCATTCAAATGTACCAATGGAAAATGttaCATCATTTGGAGAAGCAACGATATTCAAAGAAGAGTTCAGACGAAGTGAATCCGAAGATGTGCCAAAAACGGAGCATTCTAACTGGGATACCATAGACAACAAAATGATGCTTCAAATATCCAGTCTCTCTACTTACATGCAAGGAAATACACCGTTGAGAAGAAAATTCAAGTccagaaagaagaaagaaaaagtcACTGACTCTATTGACGATCAGactgaaaacaaagaaaaatacaTATGTGACTTGTGCAACAAAGAGTTTTCAGAGAAAAAGTATTTGATCGGTCATATCAAGTATCACATGTACAGAAAACCATTCTATTGCGGCATTTGCAATAAGAAATTTACGTGTCAGACTTATGCGACCGTGCACGAGCGGATTCACACAGGCGAGAGACCTTACAGTTGCAGCACCTGCCAGAAACCCTTCAGGTGTTCCAGCCACTTGAACAAGCACGAACGTATTcatacacaagataaaccacATTCTTGTGGTGTTTGTAACAAGCAATTTAGagaaaaaacacatttaaagGTCcatgagcttctacacaaaggaGAAATAGCTAAACAACACGCTTGCAAGTTTTGCCCGAAGAAGTTTCTACACGTGTACAAACTGGCTATACACGAGCGCTCTCACACTGGCGAGAAACCATTCGTCTGCAAAACGTGCGGCGAGGGTTTCATACAGAAGTTCCAACTTAGCAGCCACATGCGACTACACACAGGAGACGAACCGCGTGTGTGCGAAACGTGCGGGAAACATTTCGTAACTAAAGCGGACTTGGCCAGACACGAACTCATTCACCTAAAAAACAAGCCATTCGCTTGCGACATATGCGAGCGGCAGTTCACACAAAAAGCACACTTGACGAGTCATAGACTCATTCACACTGGTGAAAAACCTTTCTCCTGTGACATGTGTACAAAGACTTTCAGCTGCAAAGCTTCATTACGTGTCCATCGACGAGTTCATACTAACGAAAGGCCGTTCGCTTGCAAATTGTGCGGGAGGAGTTTCAAGCAGCGAGGGCAAATGAAAAGGCATCAAATTATTCATCGTGAAGAAAATCTTATTTGTAAAGTATGTAATGAACAATTTACTGTGAAAAGCGACTTGAAGCGACATCAGAAAAGACACAAGTGGGCTCACAAGTGTGACATATGTAACAAGAATTTTAGAGACAAATTCAACTTTAATAGGCATATGCAGACGCATAGTGGGAAATCTGAACAGAATGAAGACGCTAATGTCGCAACATTATCTGTGGATATAGAGTCGCCATAA
- Protein Sequence
- MSEAIKELDLETNSIKIEIVLVKQESDIEDSGISLKEEAIEEETESPGHVEMDVVSIKEEPWDSVSEAQHAGLYSGHRVDEGQVLETESEQQPNVPMVKITSFGEASTFTEEFRRSDTEAVPKTGHLNWDTIDSKMMAQISSLSTHMHENTLLRRTFKSRKKKEKVTGSINDQTENKEKYICDICNKEFSMKKYLIGHIKYHMYRKPFYCSICGKKFTCQTYATVHERIHTGERPYSCSICQKPFRCSSHLNKHQRIHTQDKPYSCGVCNKQFKERTHLKLHELLHEGEKAKQHACKICPKKFLHLYKLAIHERSHTGEKPFVCNTCGEAFKQKFQLNSHMRLHTGQEPLVCETCGKHFVTKADLARHELIHLKNKPFACDICDRQFTQKSHLTSHRLIHTGEKPFSCDMCIKTFSCKASLRVHRRVHTNERPFACKVCGRRFKQRGQMKRHQLTHRERELEVVLVKEELNLEDRGICVKEAAKEEKSKSPGHVKMEVVCVKEEAWNSVGGAQQAGLFRGDEVERDLVLGSESMQHSNVPMENVTSFGEATIFKEEFRRSESEDVPKTEHSNWDTIDNKMMLQISSLSTYMQGNTPLRRKFKSRKKKEKVTDSIDDQTENKEKYICDLCNKEFSEKKYLIGHIKYHMYRKPFYCGICNKKFTCQTYATVHERIHTGERPYSCSTCQKPFRCSSHLNKHERIHTQDKPHSCGVCNKQFREKTHLKVHELLHKGEIAKQHACKFCPKKFLHVYKLAIHERSHTGEKPFVCKTCGEGFIQKFQLSSHMRLHTGDEPRVCETCGKHFVTKADLARHELIHLKNKPFACDICERQFTQKAHLTSHRLIHTGEKPFSCDMCTKTFSCKASLRVHRRVHTNERPFACKLCGRSFKQRGQMKRHQIIHREENLICKVCNEQFTVKSDLKRHQKRHKWAHKCDICNKNFRDKFNFNRHMQTHSGKSEQNEDANVATLSVDIESP*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -