Nudd008928.1
Basic Information
- Insect
- Notocelia uddmanniana
- Gene Symbol
- -
- Assembly
- GCA_905163555.1
- Location
- LR991054.1:5921638-5940054[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.3e-09 5e-06 27.8 0.1 4 39 39 74 38 80 0.92 2 2 4.2 2.9e+03 -0.3 0.0 23 31 122 130 122 130 0.83
Sequence Information
- Coding Sequence
- ATGCTTGTGATCTTCCTCCCCGAAAATGCTCTAGCCCTATCTGTAGTATTTTCTTTTTCAGGATATATGGAAGACCCTCACCCTAAAAAACGTCGGGGACTTTGGTCGCTCCAACAATTGGAAGCTGCAATGACTGCTGTTAAAGAAGGACTTTTGTCCCAACGTGCTGCCGCCGAGCGCTATTCTGTTCCTAGAAGAACTTTGATCAACCATCTTAAAACTGGAAAGGTCGAGAGACAGTTAGGACGCCGTACAATTTTACCTGTAGAGGCAGAAAATGATTTGGTGATGAGTATCAAAAAACTTGCTTCTGAAGGCGTTTGTTTAACCCCAAAAGTTATTCGCCATCAAGCTTACGTTTTTTGTAAGCAATACGGTATTCCCAACAATTTTTGCGAGTCCACAAAACGGGCGGGGAGAGAATGGTTAAAGTTGTTTCTAAAAAGACACCCCGATATATCAAAATTGAAGGTCCTAAACCCAGGTTGGAAACGCAAGAAAAGTAAGGAATTAACTAGTAGAGAAGAGAAACTGCTACAGAAGAGGATCGCTGAACGCATTAGAAAAGCAAAGATTGCGCTCAACCCAGAACTGCAtcaaaagaagaaagaaaaggaTAGACAACGATATCATAAAAAGAAATCAGAGGGAATAATAAAATCGATTACCGAATTGCCTCCGGAAATGCAAGAGAAACATTGTTTCTCAGAACGCAGGAAACAAACATTAGAAGAAAGAAGAGAAAGACAGAAGTTGGCTAAACGTACACGGTTAGCAAGAGTTAGAAGTGACCCGGTGCTACTTCAgcaatacaaagaaaaattaaaacagagaTATCGTCAACGCAAATCAGAAGGAAAAATTAAAACGATACTAAAATTCATTACATCTAGAAGAGGGAAGCAGTTGCTGCTCGTCAAAGACTACACGTACTCTGCCACGGCGCAACGCTCCAACCCGCCTAAGGTACGCTGGATTTGCTCCACACACTGGTCCAAGGGCTGCCGAGCCACCATTGTGATGTTCTATAGCGAAATCGTCTCCGTGAACAATGCGCATAATCATCCGCGCCTTCGAAGAACAACACGTTACTGA
- Protein Sequence
- MLVIFLPENALALSVVFSFSGYMEDPHPKKRRGLWSLQQLEAAMTAVKEGLLSQRAAAERYSVPRRTLINHLKTGKVERQLGRRTILPVEAENDLVMSIKKLASEGVCLTPKVIRHQAYVFCKQYGIPNNFCESTKRAGREWLKLFLKRHPDISKLKVLNPGWKRKKSKELTSREEKLLQKRIAERIRKAKIALNPELHQKKKEKDRQRYHKKKSEGIIKSITELPPEMQEKHCFSERRKQTLEERRERQKLAKRTRLARVRSDPVLLQQYKEKLKQRYRQRKSEGKIKTILKFITSRRGKQLLLVKDYTYSATAQRSNPPKVRWICSTHWSKGCRATIVMFYSEIVSVNNAHNHPRLRRTTRY*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -