Nudd028382.1
Basic Information
- Insect
- Notocelia uddmanniana
- Gene Symbol
- -
- Assembly
- GCA_905163555.1
- Location
- LR991063.1:11118831-11127715[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.9e-09 1.3e-06 29.6 0.0 1 40 86 125 86 130 0.89
Sequence Information
- Coding Sequence
- ATGGCGGCTGCACGACGTAAAGTCCTGAAAGAGCAAGATATACTGGAATTTCTTGACAATTCCGATTATGAAGACGACGTAGGTGATTTTATCGATGATGGTACAGACGACGAGTTTTTGCCAGTTAATCGAATGGATTCTGAAACTTCGAGTAGTTCTGCATCGGAATCATCATCCGAAGACGATTCACCACCTCAGataaTCGTGCCCAGAAAGTACGTGAGAAGGATTGACGCACGGCGTTATAAAGCCTACACTGAAGATGCGTTAGAAGAATGTCTGCGGGCTATAGAGTCAAAAGTTTTAACCCAAAGAAAAGCAGCTGCAGAATTTAATATTCCAAGAAGAACACTCATCAACAGAATTAAGGCTAGAAAAGACCGCAAAAAGGTTGGTGGACCCGGATTTCCACCCATATTTAATAACGACGAAGAATTACATTTCTGCGACTGCGTTGAAAGAATGGGCCAGTACGGATTTCCACTGTCGGAGTTGGATTTACGCATCATTGGTAAAGCGTACCTTGACAAAATGGGCCGAACTGTcaaaagatttaaaaataatatgccaGGGACAGAATGGGTTTCCTCATTTGTACGTCGTCATACAAGCTTGTCTAAGAGATTTGCAGCCAATATTAAACGAGCAAGAGCTGCTGTCGATGTCGATGCTTTAACCCAATTTGTTGACAATATCAAGGTAGCAGTTGAAGGAGTGCCTGCCAGTAACATTTGGAATTTTGACGAAACCAACCTCACAGATGACCCTGGTAATAAAAGAGTGATCGTAAAAAGGGGAACCAAGTATCCCGAACTTATCCGCAACGCATCAAAAAGTTCAATTTCCTTGATGTTTTGTGGCAATGCTGAAGGTGAGCTGCTGCCGTTGTATGTTGTTTATAAATCGACTTGTCTCTGGACCACATGGACAGAAGGAGGACCACCGAATACCCGCTATAATTGCAGTCCTAGTGGATGGTtcgatatgaatatttttacggaTTGGTTTCAATCTTTATTTCTACCTCGACTGAAAAAACAATCAGGGAAAAAGGTCATTATATGTGACAATCTATCATCTCATATAGCCTTGGACATTCTCCAGCAATGCAAGGACAATGATATAGAGTTTTTGTGCCTACCACCCAACAGCACACACCTAACGCAACCGTTAGATGTGGCTTTCTTTCATCCACTGAAAGCCGGATGGAGGTCTGTGCTGAGTGACTGGAAGTCCAGTCAAATTGGACATAAGGACACTACTTTGTCAAAGGGTATGTTTCCTCTCATGCTAAAACGGCTAATGGACGTAATTACACCAAACAGTTCGAAAAACATACAGGCGGGGTTTAAAAAAAGTGGCATTTATCCAACGGATATCCAACCACTCTTGGAAAGAATTCCGCAGAATGTCGATAAGGAGGCCATCAACCAATCTTTCATTGATAGTCTTGAAAATAAAAGGGTAGAATGGACGCAAGGAATCACTAATAAAGGACGCaagaaattgaaaataatacctGGGAAGAGTGTAGCAGAACAGCTTCTATCGGAGACGACGGGGGAATTCATAAACGTCACAATGCCCAGCACAAGCTCAAGAAAAACTCGTCGAGATAAAAGCAGTGACAGTGAGGCCAGTGCCCAAATTTCGTTGAGAGATTCTTCCGAGGGGCCTCTGAGTGATTTGGAAAATGAGCCTCCAGTTGCCAAAGACCAAAACCAAAGTTTCCAACCTTTATTGAGAAAGGTGGGACAGTATGTGGTTTTTATGTTTGAAGGTGAAATCTTCCCTGGTGTAATAACGAAGATATCTGGCAAAGGCCCTAAAATATCGGCCATGCAGAGATCCCTCAAAAATTGGAAATGGCCAAAACCCAAAGatgaaattatttacaaatgggCGGACGTCCTAGGAGGCATAAACGTTCCCAAAAAAGTAGGAAGACGAGAGTTTTATTCCATTCCTGAACTAGATTATTTGTGGGCTCATTGA
- Protein Sequence
- MAAARRKVLKEQDILEFLDNSDYEDDVGDFIDDGTDDEFLPVNRMDSETSSSSASESSSEDDSPPQIIVPRKYVRRIDARRYKAYTEDALEECLRAIESKVLTQRKAAAEFNIPRRTLINRIKARKDRKKVGGPGFPPIFNNDEELHFCDCVERMGQYGFPLSELDLRIIGKAYLDKMGRTVKRFKNNMPGTEWVSSFVRRHTSLSKRFAANIKRARAAVDVDALTQFVDNIKVAVEGVPASNIWNFDETNLTDDPGNKRVIVKRGTKYPELIRNASKSSISLMFCGNAEGELLPLYVVYKSTCLWTTWTEGGPPNTRYNCSPSGWFDMNIFTDWFQSLFLPRLKKQSGKKVIICDNLSSHIALDILQQCKDNDIEFLCLPPNSTHLTQPLDVAFFHPLKAGWRSVLSDWKSSQIGHKDTTLSKGMFPLMLKRLMDVITPNSSKNIQAGFKKSGIYPTDIQPLLERIPQNVDKEAINQSFIDSLENKRVEWTQGITNKGRKKLKIIPGKSVAEQLLSETTGEFINVTMPSTSSRKTRRDKSSDSEASAQISLRDSSEGPLSDLENEPPVAKDQNQSFQPLLRKVGQYVVFMFEGEIFPGVITKISGKGPKISAMQRSLKNWKWPKPKDEIIYKWADVLGGINVPKKVGRREFYSIPELDYLWAH*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00660243;
- 90% Identity
- iTF_01072413;
- 80% Identity
- -