Nudd049369.1
Basic Information
- Insect
- Notocelia uddmanniana
- Gene Symbol
- CFDP2
- Assembly
- GCA_905163555.1
- Location
- LR991077.1:1317861-1335145[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.00033 0.23 12.8 0.0 6 39 19 52 16 57 0.91 2 2 2.3e-05 0.016 16.6 0.0 1 23 390 411 390 428 0.87
Sequence Information
- Coding Sequence
- ATGCGGAATTATACAAGGAAAACGAATCGGGGTCTTGTATCCCTCGAGCTGGTGCAGGCCGCGGCGGATAAAGTCCTACACAAGGGTGTCAGCATCAGGAAAACAGCCAGAGAAATGAACATTTGCCACATAACACTGTCCCGGTTTATAAACAGACTGAAGACTGGAATGAAACCTACTATTGGCTATAAACCAAAGCTCCTATTTAACGAAGAACAGGAGAAACAGATTCTTAAGCATTTAGCTGAATTCGCTAAAGTTTTCTGTGGTTTAACAGAACATGAGTTACGAAAATTCGCCTATCAATGTGCAATAACACTGAAACTTACAAATATACCTGAAAGTTGGTATAAAAATGGCAAGGCAAGCAAGGACTGGGCTGATAAATTTATCATACGTCATCAGGTTCCGATTCGACCATTGCCAACAGAAACTAAAGACATAGTTAAAAGCTACAGTATTCTCCACAAATTGATGGAAGAGTATAAGTTTCTACCGTCAAGAATATATCATTTGGTTGACGTTGTTATCAGgaaagtattaaaatataaaaagaatgCCAATGGCACTGTTTCAACGTCCATAAGCCAATCGACACCAGTAAACATGCAATTTGCAGCAAATGCTACAGGAGTAACTGTACCACCAATGTTTGTTACTAACGAATACAAAGCCACATATGTTATCAAGAAGAGTTCTGGATGTATGACAGTGAAAGATTTTCCAGTATACTTGGATCATTTCATCAAACACACTAAACCGAATAAATCCGACCCTGTTTTGTTATTAATAGACAACCAGGAATACTTAGATTTGAATGTGCTAGAAAGAGCCAGAGCTAACTCTGTAGTTCTCCTCTCTTTCCCTAAAGTGCACTCCATACAGCCGTTAAAAAACATTGCAAAGGATGTTCTGGAATCCTGTAATTCTGTCCAAGTTGACTGGTTATGTTCTAAGCCTAATACAACATGTGATATACCAGAGATAGTTAGTAAGGTCATGTTAAAAGTAACGGAAAAGGATATAGTGAAGTGTTTTCGAAAGACTGGAGTGTGGCCGTTTAATCCTACAGTTGTAACGGGTGAAGAATTTGTGCCGACAGCTGTTGAGGAGTATGATTTTAAAATGGCTCGTGGTAAAAAACCGTTTAGAAAATACGGAAACCATACAGAAGAGAATATGAGAAAGGCAATAGAGTTAATACAATCTGGTTTAAGTATACGACAGGCCAGCATGCAGTGTCTACTCAGCTACGCGACCGTTCGCAGATATTTGCAACTAACGAAAAACAATCAGggaaaagaaatacgtttgacTCCCAACTACGAAGTAAACAGGATATTTACAACTGAAGAAGAAACATGCCTCGTGAAATACATCAAATATTGCTCCAAACAGTTCGAAGAAGATCTCTCGTCGAACGACTGCCGGCGGGTAGCGTATGAAATGGCCTGCATAATTAAGAAAAAGATACCAAAAAGGTGGACACAAGACCAAAAAGCCGGTATAGAATGGTTTAGGTTATTTAAGAGCAGACATCCAGGGCTTTCAGTGAGGAAACCTAACGCTGGCGATGTAATAAAAGAGACTGTGTTCGATAAGCAAGATATGGAGGCATTCTTTTGCTATTTGAATATTGCTAAGGAGGTTAAGGTGAGTGAACAGGAGGTGCAGCCGGGACCAAGCAAGGCACTGGCCCCGACAACTTCGCTGGATTCCACCGCGTTCAAAGAGCAAGATCCACTGAGCAGTAGAGTCATAGATCAGTGCCGATTCTGCGGCGAGTTCTCCAAAGACTGCGTCCCCGTGTCCGGCAACATGCCGTACCTAGCTCACAACAAGACCACACTAGTCCTCAACGACACCAGCGTGCAGCTAGACTTCAACGATGGCTCCCTACCGAAGACCGTCTGCGGAGACTGCGACGCTAAGCTACAAGAGATCGCAGACTTTGTCAATGTCGTCAAATCTGCGCAGGACACGCTTATCAGTTTTGCTGAAGAAAAAGCAGAATATGCAGAAACTAGAGTAGAATTTAAAGTGGCTAAAGCAGAAGAGACAGTAAACACTGAAGCAGAGACTTTAGTTATTAAGACGGAATATGACTCACAACATGAAGAGAGTGATGATGATAAAGAAGATAAGGAAGGAATTGTGGATTCTCTAACTGTCGGTGAGACAGTATTCGTCAAAAAAACTATCACTCATAAAAGGAAAAGTGATTCAGTAACAGCTAAACCGAAGAaactaaaaacagtaaaaactaaaaaatgtgATGATGAATTAATTATTGATATTAAAGAAGAAGTTATTGAAAAAGAAGGGCAGGGACTATCTGAAGTTAGTGATTATGTGAAACCTAGTGAACTGGAAATGGCGACGAATGCTTTAGTGCTCGAAATGGCTGGCCTCAGCGAGGTGAGACGAAAAGGCGATAAATTGGAAGAATGGGATGATTCCCTATTCTACTTCAGAGGCGAAACTCAGGGAAGACATGGAGTtggatatataataaaaaagcaTCTTAAAGACCAAATAGAAGAAATAATTGGAATATCAGAACGCATAGCTGTATTGAACTTGAAAGTCCCCAATTACAAAGATAACTGGACAATTATACAGGCTTATGCTCCTACTGAAAATGCAAATATTGATGATGCTGAAAACTTTTATGCCGACTTAAATAATACTATTGAACAACATGCTCACAAAAACTTAGTGGTAATGGGCGACTTCAATGCCCAAGTCGCAAACAGCCAACATGGCGAAGATAGTATCCTGGGTAAATACAGTACTGGAAGACGTAGTAAAAACGGAGAAAGACTTATCAACCTTGCATTCACACACAATCTAACAGTACTAAACAGTATCTACAAGAAAAAAACGAAAAGGAAGTGGACATGGATATCGCCTGATGGGAGATACACTAATGAAATCGATTTCATCCTCATAAACAGACCAAAAGCCTTCCAGGATATTAATGTGctaaacaaatttaatttcaacACAAACCATCGAATGGTTAGAGCAGATCTAAAAACGAAACCTATGAAGAATCGTAGACCGCAAATGCAGCTTCCACTGAAGATAGAAGATGAAGAATCCTTAAGGAAAACGAGAGCAGCTTTAGAACAAAACTTAGAAGCTTTCAAAGATGACACCAAAACCTTAGGCGTTCAGGAACAATACGATTATTGTTTTGGTACCTAA
- Protein Sequence
- MRNYTRKTNRGLVSLELVQAAADKVLHKGVSIRKTAREMNICHITLSRFINRLKTGMKPTIGYKPKLLFNEEQEKQILKHLAEFAKVFCGLTEHELRKFAYQCAITLKLTNIPESWYKNGKASKDWADKFIIRHQVPIRPLPTETKDIVKSYSILHKLMEEYKFLPSRIYHLVDVVIRKVLKYKKNANGTVSTSISQSTPVNMQFAANATGVTVPPMFVTNEYKATYVIKKSSGCMTVKDFPVYLDHFIKHTKPNKSDPVLLLIDNQEYLDLNVLERARANSVVLLSFPKVHSIQPLKNIAKDVLESCNSVQVDWLCSKPNTTCDIPEIVSKVMLKVTEKDIVKCFRKTGVWPFNPTVVTGEEFVPTAVEEYDFKMARGKKPFRKYGNHTEENMRKAIELIQSGLSIRQASMQCLLSYATVRRYLQLTKNNQGKEIRLTPNYEVNRIFTTEEETCLVKYIKYCSKQFEEDLSSNDCRRVAYEMACIIKKKIPKRWTQDQKAGIEWFRLFKSRHPGLSVRKPNAGDVIKETVFDKQDMEAFFCYLNIAKEVKVSEQEVQPGPSKALAPTTSLDSTAFKEQDPLSSRVIDQCRFCGEFSKDCVPVSGNMPYLAHNKTTLVLNDTSVQLDFNDGSLPKTVCGDCDAKLQEIADFVNVVKSAQDTLISFAEEKAEYAETRVEFKVAKAEETVNTEAETLVIKTEYDSQHEESDDDKEDKEGIVDSLTVGETVFVKKTITHKRKSDSVTAKPKKLKTVKTKKCDDELIIDIKEEVIEKEGQGLSEVSDYVKPSELEMATNALVLEMAGLSEVRRKGDKLEEWDDSLFYFRGETQGRHGVGYIIKKHLKDQIEEIIGISERIAVLNLKVPNYKDNWTIIQAYAPTENANIDDAENFYADLNNTIEQHAHKNLVVMGDFNAQVANSQHGEDSILGKYSTGRRSKNGERLINLAFTHNLTVLNSIYKKKTKRKWTWISPDGRYTNEIDFILINRPKAFQDINVLNKFNFNTNHRMVRADLKTKPMKNRRPQMQLPLKIEDEESLRKTRAALEQNLEAFKDDTKTLGVQEQYDYCFGT*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -