Nnoc023867.1
Basic Information
- Insect
- Nomophila noctuella
- Gene Symbol
- -
- Assembly
- GCA_958496325.1
- Location
- OY292510.1:6822982-6835409[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.068 5.5 8.3 3.5 1 23 1005 1027 1005 1027 0.99 2 11 0.13 10 7.4 4.7 3 23 1036 1056 1035 1056 0.97 3 11 9.4 7.5e+02 1.5 0.0 2 23 1061 1083 1060 1083 0.79 4 11 0.14 11 7.3 0.3 1 23 1090 1112 1090 1112 0.97 5 11 5.2e-05 0.0042 18.1 1.1 2 23 1117 1138 1116 1138 0.96 6 11 0.0079 0.64 11.2 1.8 1 23 1144 1166 1144 1166 0.96 7 11 0.031 2.5 9.3 2.9 2 21 1173 1192 1172 1197 0.93 8 11 0.01 0.81 10.9 0.2 1 23 1205 1228 1205 1228 0.92 9 11 0.036 2.9 9.1 0.5 2 23 1235 1259 1234 1259 0.96 10 11 0.0024 0.19 12.8 2.9 1 23 1268 1290 1268 1290 0.98 11 11 0.16 13 7.1 0.5 1 23 1296 1319 1296 1319 0.93
Sequence Information
- Coding Sequence
- atgaatgtaAATTTAAGTTGCGTGTCTCTTAGTAATATCTGCGAGGGCTGTTTGAGCCGTGACAGGAATCTGAAGACTGAAATCGAACCAGAAATCAAGAAATTCTTCCAGAGTATTATTGAGCCTTTTAATTGCTACTCTGATGAAGCACACACCAGACATCCTCTGGGCCTGTGTTGGGAATGCACGGCCATCATAAAGAGAGTGCTGAGATACCAGAAACAAGTGCAACGGGCACACAGCTATCTTTCTAACTACATGTGCCAAGACTCAAAACCACTGCCACAATTCTCATGCCTTAGCACTCACCAACCGCCACCAGAAATCACAATCACAATCACACTCGACTCCGACGCTCGTGTCACCAGACAATCGGCCAAGTTGTTGATAGAACCGCTGCCGTTTATAAAGGTGGaagatgttgatgatgaagaCATTGAAGGGTTTTACGTTGATGATGGTGGAGGAGTCGATGATAAGGATTTGACGGCAGTAGTCAAATCTGACCCTTTCATTCATAAAGAAGAAAAACTTAGAAAGAAGAGAAGGAAAAAGAAGGCAGAAGTAGAATTTGATGAGTCTGATGATGAACCACTTAAGAAGAGAACAGAAGATGATAAACTGGGTGTAACAGAGGTTCCTGAATGCAAACCGAAAGTTAGAaggaaaaagaagaaagaagcAGACCAGGTCAAAAAGCCATCATCTCGGGAGAAGCCAGCAGGCGTGGTGGTGAACCCGCTCGTGTCgcggcggctgcagcggctCAGCGTGCCGCCGGGACAGCTCGAGATGATCCTGCTCTCCTGGGACCAGGTCAGCGCTGGGACTGGGTGTGGGGAGACCCTGGGCGAGAGGCAGCAGCGGCTCAGCGTGCCGCCGGGACAGCTCGAGATGATCCTGCTCTCCTGGGACCAGGTCAGCGCTGGGACTGGGTGTGGGGAGACCCTGGGCGAGAGGCAGCAGCGGCTCAGCGTGCCGCCGGGACAGCTCGAGATGATCCTGCTCTCCTGGGACCAGGTCAGCGCTGGGACTGGGTGTGGGGAGACCCTGGGCGAGAGGCAGCAGCGGCTCAGCGTGCCGCCGGGACAGCTCGAGATGATCCTGCTCTCCTGGGACCAGGTCAGCGCTGGGACTGGGTGTGGGGAGACCCTGGGCGAGAGGCAGCAGCGGCTCAGCGTGCCGCCGGGACAGCTCGAGATGATCCTGCTCTCCTGGGACCAGGTCAGCGCTGGGACTGGGTGTGGGGAGACCCTGGGCGAGAGGCAGCAGCGGCTCAGCGTGCCGCCGGGACAGCTCGAGATGATCCTGCTCTCCTGGGACCAGGTCAGCGCTGGGACTGGGTGTGGGGAGACCCTGGGCGAGAGGCAGCAGCGGCTCAGCGTGCCGCCGGGACAGCTCGAGATGATCCTGCTCTCCTGGGACCAGGTCAGCGCTGGGACTGGGTGTGGGGAGACCCTGGGCGAGAGGCAGCAGCGGCTCAGCGTGCCGCCGGGACAGCTCGAGATGATCCTGCTCTCCTGGGACCAGGTCAGCGCTGGGACTGGGTGTGGGGAGACCCTGGGCGAGAGGCAGCAGCGGCTCAGCGTGCCGCCGGGACAGCTCGAGATGATCCTGCTCTCCTGGGACCAGGTCAGCGCTGGGACTGGGTGTGGGGAGACCCTGGGCGAGAGGCAGCAGCGGCTCAGCGTGCCGCCGGGACAGCTCGAGATGATCCTGCTCTCCTGGGACCAGGTCAGCGCTGGGACTGGGTGTGGGGAGACCCTGGGCGAGAGGCAGCAGCGGCTCAGCGTGCCGCCGGGACAGCTCGAGATGATCCTGCTCTCCTGGGACCAGGTCAGCGCTGGGACTGGGTGTGGGGAGACCCTGGGCGAGAGGCAGCAGCGGCTCAGCGTGCCGCCGGGACAGCTCGAGATGATCCTGCTCTCCTGGGACCAGGTCAGCGCTGGGACTGGGTGTGGGGAGACCCTGGGCGAGAGGCAGCAGCGGCTCAGCGTGCCGCCGGGACAGCTCGAGATGATCCTGCTCTCCTGGGACCAGGTCAGCGCTGGGACTGGGTGTGGGGAGACCCTGGGCGAGAGGCAGCAGCGGCTCAGCGTGCCGCCGGGACAGCTCGAGATGATCCTGCTCTCCTGGGACCAGGTCAGCGCTGGGACTGGGTGTGGGGAGACCCTGGGCGAGAGGCAGCAGCGGCTCAGCGTGCCGCCGGGACAGCTCGAGATGATCCTGCTCTCCTGGGACCAGGTCAGCGCTGGGACTGGGTGTGGGGAGACCCTGGGCGAGAGGCAGCAGCGGCTCAGCGTGCCGCCGGGACAGCTCGAGATGATCCTGCTCTCCTGGGACCAGGTCAGCGCTGGGACTGGGTGTGGGGAGACCCTGGGCGAGAGGCAGCAGCGGCTCAGCGTGCCGCCGGGACAGCTCGAGATGATCCTGCTCTCCTGGGACCAGGTCAGCGCTGGGACTGGGTGTGGGGAGACCCTGGGCGAGAGGCAGCAGCGGCTCAGCGTGCCGCCGGGACAGCTCGAGATGATCCTGCTCTCCTGGGACCAGGTCAGCGCTGGGACTGGGTGTGGGGAGACCCTGGGCGAGAGGCAGCAGCGGCTCAGCGTGCCGCCGGGACAGCTCGAGATGATCCTGCTCTCCTGGGACCAGGTCAGCGCTGGGACTGGGTGTGGGGAGACCCTGGGCGAGAGGCAGCAGCGGCTCAGCGTGCCGCCGGGACAGCTCGAGATGATCCTGCTCTCCTGGGACCAGGTCAGCGCTGGGACTGGGTGTGGGGAGACCCTGGGCGAGAGGCAGCAGCGGCTCAGCGTGCCGCCGGGACAGCTCGAGATGATCCTGCTCTCCTGGGACCAGGTCAGCGCTGGGACTGGGTGTGGGGAGACCCTGGGCGAGAGGCAGCAGCGGCTCAGCGTGCCGCCGGGACAGCTCGAGATGATCCTGCTCTCCTGGGACCAGGTAGAGGAAGAGAGGCAGAAGGCTCTCTCCAGCGAAGCGTACACGCGGCACGAATACCGTTGTTCGTCGTGCGCCGTCGGGTTCAATCACCGGTTTAAGCTCGACAATCATATGAAGAAACATGACCCGTCTGCAGGTAATGCATTATGTACAGCATGCGGCGTGCGGTGTCGCGACGCGCATGCGCTCTGCGCGCACAGGAGGAGGCATCGCGTCAGatggcgctgcgTAGTATGCGGCGAGATGAGTTCCCGGGCCGAAGTCGCGGCCGATCATGTCGCGAGAGTAcacggcgccgcgccgcccacgcACACCTGCGCGCTCTGCGGGGACACCGCGCCGACACTCGGTAAACTTCGCATACATATGAAAAACCATTCGGAAAGACAGAAGTGTGAGCTATGCGAAAAAACATTCAGAGATAGAGCGTCTTTGAAGACGCATCTGTTCATCCACAAAGGTGAGAAAGAACACGAGTGTCCCGAATGCGGCAAACGATTCCTGTTCAAGAAAGCGATGCAACTGCACCGGGACACGCATGCACCGCCCGCGCACCTCTACTGCCATCAGTGCGACGTCAACTTCAAAAACCGTATGTCGTACTACCAACACATGAAGTACAACTTGAAACACATAGATCCTGCCATGCTTAAGTACGCATGCTCGCTCTGCGACAAGAAGTTCGCGAAGGCGGCGCGCCTGCACGACCACGTGTTGGCGGTGCATCTCGCTGCAACGCCAGTGAAGTGCACAGTGGGGGAATGCAATTTTGCCTGCTCGTCCCGGCCCGTGCTCCGAACCCACATACGGATGGTGCACAGAAACCTGAAGACTGTCAGGAATCACGTCTGCCACACTTGCGGAAAGGCTTACTTGACCAAGAAAACCCTGGAAGGCCACATAAGGTCTCATACAGGGGAGCGCCCGTTCTCCTGTACTCAATGTTCTTCCACATTCGCCTACGAAGCAGCTCTGTATAACCATAATAAGCTCGTGCATCTTAAAACTAAGGGGTCTCGTCGTGTGCCTAAACCTACTAGCACAGACGCTACCACAGTCCCAGTTGGGGCCACATGGACCTTACCTCTGGCTTTGCCCCTTCAGCTACCCCCAAACGGACAGGATATCGCCTTACccagataa
- Protein Sequence
- MNVNLSCVSLSNICEGCLSRDRNLKTEIEPEIKKFFQSIIEPFNCYSDEAHTRHPLGLCWECTAIIKRVLRYQKQVQRAHSYLSNYMCQDSKPLPQFSCLSTHQPPPEITITITLDSDARVTRQSAKLLIEPLPFIKVEDVDDEDIEGFYVDDGGGVDDKDLTAVVKSDPFIHKEEKLRKKRRKKKAEVEFDESDDEPLKKRTEDDKLGVTEVPECKPKVRRKKKKEADQVKKPSSREKPAGVVVNPLVSRRLQRLSVPPGQLEMILLSWDQVSAGTGCGETLGERQQRLSVPPGQLEMILLSWDQVSAGTGCGETLGERQQRLSVPPGQLEMILLSWDQVSAGTGCGETLGERQQRLSVPPGQLEMILLSWDQVSAGTGCGETLGERQQRLSVPPGQLEMILLSWDQVSAGTGCGETLGERQQRLSVPPGQLEMILLSWDQVSAGTGCGETLGERQQRLSVPPGQLEMILLSWDQVSAGTGCGETLGERQQRLSVPPGQLEMILLSWDQVSAGTGCGETLGERQQRLSVPPGQLEMILLSWDQVSAGTGCGETLGERQQRLSVPPGQLEMILLSWDQVSAGTGCGETLGERQQRLSVPPGQLEMILLSWDQVSAGTGCGETLGERQQRLSVPPGQLEMILLSWDQVSAGTGCGETLGERQQRLSVPPGQLEMILLSWDQVSAGTGCGETLGERQQRLSVPPGQLEMILLSWDQVSAGTGCGETLGERQQRLSVPPGQLEMILLSWDQVSAGTGCGETLGERQQRLSVPPGQLEMILLSWDQVSAGTGCGETLGERQQRLSVPPGQLEMILLSWDQVSAGTGCGETLGERQQRLSVPPGQLEMILLSWDQVSAGTGCGETLGERQQRLSVPPGQLEMILLSWDQVSAGTGCGETLGERQQRLSVPPGQLEMILLSWDQVSAGTGCGETLGERQQRLSVPPGQLEMILLSWDQVSAGTGCGETLGERQQRLSVPPGQLEMILLSWDQVEEERQKALSSEAYTRHEYRCSSCAVGFNHRFKLDNHMKKHDPSAGNALCTACGVRCRDAHALCAHRRRHRVRWRCVVCGEMSSRAEVAADHVARVHGAAPPTHTCALCGDTAPTLGKLRIHMKNHSERQKCELCEKTFRDRASLKTHLFIHKGEKEHECPECGKRFLFKKAMQLHRDTHAPPAHLYCHQCDVNFKNRMSYYQHMKYNLKHIDPAMLKYACSLCDKKFAKAARLHDHVLAVHLAATPVKCTVGECNFACSSRPVLRTHIRMVHRNLKTVRNHVCHTCGKAYLTKKTLEGHIRSHTGERPFSCTQCSSTFAYEAALYNHNKLVHLKTKGSRRVPKPTSTDATTVPVGATWTLPLALPLQLPPNGQDIALPR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -