Nnoc002348.1
Basic Information
- Insect
- Nomophila noctuella
- Gene Symbol
- -
- Assembly
- GCA_958496325.1
- Location
- OY292483.1:811819-820972[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.004 0.32 12.1 1.1 2 23 198 220 197 220 0.96 2 22 0.65 52 5.2 5.9 1 23 225 248 225 248 0.92 3 22 6.9e-07 5.6e-05 24.0 1.2 1 23 254 276 254 276 0.98 4 22 2.4e-05 0.0019 19.1 1.5 1 23 282 304 282 304 0.98 5 22 5.4e-06 0.00044 21.2 0.5 3 23 311 331 309 331 0.96 6 22 1.5e-05 0.0012 19.7 1.0 1 23 337 359 337 359 0.98 7 22 5.2 4.2e+02 2.3 0.6 1 11 365 375 365 381 0.86 8 22 6.2 5e+02 2.1 0.6 9 23 409 423 408 423 0.93 9 22 5.2 4.2e+02 2.3 0.6 1 11 429 439 429 445 0.86 10 22 6.2 5e+02 2.1 0.6 9 23 473 487 472 487 0.93 11 22 5.2 4.2e+02 2.3 0.6 1 11 493 503 493 509 0.86 12 22 6.2 5e+02 2.1 0.6 9 23 537 551 536 551 0.93 13 22 5.2 4.2e+02 2.3 0.6 1 11 557 567 557 573 0.86 14 22 6.2 5e+02 2.1 0.6 9 23 601 615 600 615 0.93 15 22 5.2 4.2e+02 2.3 0.6 1 11 621 631 621 637 0.86 16 22 6.2 5e+02 2.1 0.6 9 23 665 679 664 679 0.93 17 22 5.2 4.2e+02 2.3 0.6 1 11 685 695 685 701 0.86 18 22 6.2 5e+02 2.1 0.6 9 23 729 743 728 743 0.93 19 22 5.2 4.2e+02 2.3 0.6 1 11 749 759 749 765 0.86 20 22 6.2 5e+02 2.1 0.6 9 23 793 807 792 807 0.93 21 22 0.00051 0.041 15.0 2.6 1 23 813 835 813 835 0.99 22 22 0.00017 0.014 16.4 0.2 1 23 841 864 841 864 0.98
Sequence Information
- Coding Sequence
- ATGGACTTGAACCTAACTTGTCGTAGCTGTATGAAAAAAATGACATCACGTagtaagaaaaacaattatacaaaaacagtagaaatgttttgtttttgtctcAACGTAAAAATTTCAGAGGAAGACAATCTACCGAAGCAGTTCTGCAGCATATGTGTCAGTAAAATAGAATCATCGTACACATTTATAACGCAAGCCCAGAAGGTTGATTTGACGCTCAGGAACTTACTTTCTCGCGCCGAAACAAGTGTAATCGTCAAGCCAGAACGTAAGAACAGTacagaaaacaaattaataaaatgcgaGTTTCCTGAACAAAATGAGTCATCAGACTTCGTTTTAAAAGTTGAAGTTGAAAAAGATTCGGCAGAAAATACATCAGCCCCCCTAATTGAAATAAGTTTACTTCCAAATGAACAATGCAACAATGCTATTACGAAACTTAAACCTGATATAATCGACTCAAATGATAATTTCAACCACCATGAAGATGATAATATCATAACTGATGATGAAATTACAGATTTAGAATGTAATAATGTGGTAGAAAATGATGtggttgaaaaaaataaaacaaataaggaGAAAAAAGTTTGTCCGATTTGTACAAGAACATTTGGATCAGCATTATGGTAtcataaacatttgaaaaaggAACATGGGAAAAAGAATTTTAGCTGCAAAATCTGTTCTAAGTCATTTCAAACACTAACAAAGTGCAAGTCACACTTTAGATATGCACATCCGGCTGAACGTAATTTCTCATGCGCTGAGTGCGGCAAACGTTACAAACGAAGGAAACAGCTGGCTGAGCACATGCGCAGCCACGAAGAAAGCAAGCCGTTTGTATGTGACATTTGCTCAAAAAGCTTTAAGAAGAAAAGTGTATTGTTGTATCACATGATGTATCATAAGGACAGGACGCATCTGTGCAACGTGTGCGGGTTGAGCTTTGCTGCCAAATCGAACCTAGTGACGCACATGCGCGTGCACAGCGGCGAGAAGCCGTACCGCTGCGGCGAGTGCCCCAAGGCGTTCAACACCAGCTCCAGCCGGCGCCGGCACGAGCGCCTGCACCGCGGCGAGCAGCCGTACGTCTGCGACACCTGCGCCAAGCCCTTCAGCTGCCTCTCCTCTCTGGTGAGTGAGGGTGAGACTCCCCAAGGCGTTCAACACCAGCTCCAGCCGGCGCCGGCACGAGCGCCTGCACCGCGGCGAGCAGCCGCGTTCAACACCAGCTCCAGCCGGCGCCGGCACGAGCGCCTGCACCGCGGCGAGCAGCCGTACGTCTGCGACACCTGCGCCAAGCCCTTCAGCTGCCTCTCCTCTCTGGTGAGTGAGGGTGAGACTCCCCAAGGCGTTCAACACCAGCTCCAGCCGGCGCCGGCACGAGCGCCTGCACCGCGGCGAGCAGCCGCGTTCAACACCAGCTCCAGCCGGCGCCGGCACGAGCGCCTGCACCGCGGCGAGCAGCCGTACGTCTGCGACACCTGCGCCAAGCCCTTCAGCTGCCTCTCCTCTCTGGTGAGTGAGGGTGAGACTCCCCAAGGCGTTCAACACCAGCTCCAGCCGGCGCCGGCACGAGCGCCTGCACCGCGGCGAGCAGCCGCGTTCAACACCAGCTCCAGCCGGCGCCGGCACGAGCGCCTGCACCGCGGCGAGCAGCCGTACGTCTGCGACACCTGCGCCAAGCCCTTCAGCTGCCTCTCCTCTCTGGTGAGTGAGGGTGAGACTCCCCAAGGCGTTCAACACCAGCTCCAGCCGGCGCCGGCACGAGCGCCTGCACCGCGGCGAGCAGCCGCGTTCAACACCAGCTCCAGCCGGCGCCGGCACGAGCGCCTGCACCGCGGCGAGCAGCCGTACGTCTGCGACACCTGCGCCAAGCCCTTCAGCTGCCTCTCCTCTCTGGTGAGTGAGGGTGAGACTCCCCAAGGCGTTCAACACCAGCTCCAGCCGGCGCCGGCACGAGCGCCTGCACCGCGGCGAGCAGCCGCGTTCAACACCAGCTCCAGCCGGCGCCGGCACGAGCGCCTGCACCGCGGCGAGCAGCCGTACGTCTGCGACACCTGCGCCAAGCCCTTCAGCTGCCTCTCCTCTCTGGTGAGTGAGGGTGAGACTCCCCAAGGCGTTCAACACCAGCTCCAGCCGGCGCCGGCACGAGCGCCTGCACCGCGGCGAGCAGCCGCGTTCAACACCAGCTCCAGCCGGCGCCGGCACGAGCGCCTGCACCGCGGCGAGCAGCCGTACGTCTGCGACACCTGCGCCAAGCCCTTCAGCTGCCTCTCCTCTCTGGTGAGTGAGGGTGAGACTCCCCAAGGCGTTCAACACCAGCTCCAGCCGGCGCCGGCACGAGCGCCTGCACCGCGGCGAGCAGCCGCGTTCAACACCAGCTCCAGCCGGCGCCGGCACGAGCGCCTGCACCGCGGCGAGCAGCCGTACGTCTGCGACACCTGCGCCAAGCCCTTCAGCTGCCTCTCCTCTCTGAACCGTCACCGGCGCACCCATACCGGCGAGCAGCCTTACCAGTGTCCGTGGTGCCCGCAGAGTTTCGTCGACAGCTGGAAACGGAAGGTCCACATAATGCGCATGCACGGCACGGGTCTGGCGGAGATCCCGCGCCTGGCGCAGGACGGCAGCATCCTGGACGCCCGCGGCCGTCCGCCCACCATCCGCCACGGCGACGACAACTAG
- Protein Sequence
- MDLNLTCRSCMKKMTSRSKKNNYTKTVEMFCFCLNVKISEEDNLPKQFCSICVSKIESSYTFITQAQKVDLTLRNLLSRAETSVIVKPERKNSTENKLIKCEFPEQNESSDFVLKVEVEKDSAENTSAPLIEISLLPNEQCNNAITKLKPDIIDSNDNFNHHEDDNIITDDEITDLECNNVVENDVVEKNKTNKEKKVCPICTRTFGSALWYHKHLKKEHGKKNFSCKICSKSFQTLTKCKSHFRYAHPAERNFSCAECGKRYKRRKQLAEHMRSHEESKPFVCDICSKSFKKKSVLLYHMMYHKDRTHLCNVCGLSFAAKSNLVTHMRVHSGEKPYRCGECPKAFNTSSSRRRHERLHRGEQPYVCDTCAKPFSCLSSLVSEGETPQGVQHQLQPAPARAPAPRRAAAFNTSSSRRRHERLHRGEQPYVCDTCAKPFSCLSSLVSEGETPQGVQHQLQPAPARAPAPRRAAAFNTSSSRRRHERLHRGEQPYVCDTCAKPFSCLSSLVSEGETPQGVQHQLQPAPARAPAPRRAAAFNTSSSRRRHERLHRGEQPYVCDTCAKPFSCLSSLVSEGETPQGVQHQLQPAPARAPAPRRAAAFNTSSSRRRHERLHRGEQPYVCDTCAKPFSCLSSLVSEGETPQGVQHQLQPAPARAPAPRRAAAFNTSSSRRRHERLHRGEQPYVCDTCAKPFSCLSSLVSEGETPQGVQHQLQPAPARAPAPRRAAAFNTSSSRRRHERLHRGEQPYVCDTCAKPFSCLSSLVSEGETPQGVQHQLQPAPARAPAPRRAAAFNTSSSRRRHERLHRGEQPYVCDTCAKPFSCLSSLNRHRRTHTGEQPYQCPWCPQSFVDSWKRKVHIMRMHGTGLAEIPRLAQDGSILDARGRPPTIRHGDDN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -