Nnoc024291.1
Basic Information
- Insect
- Nomophila noctuella
- Gene Symbol
- -
- Assembly
- GCA_958496325.1
- Location
- OY292511.1:6411483-6420365[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 2.7e-06 0.00022 22.1 0.5 1 23 64 86 64 86 0.98 2 15 0.0093 0.75 11.0 3.0 1 23 92 114 92 114 0.98 3 15 0.0026 0.21 12.7 0.4 1 23 149 171 149 171 0.98 4 15 0.00078 0.063 14.4 0.2 1 23 206 228 206 228 0.98 5 15 0.0013 0.11 13.6 0.7 1 23 263 285 263 285 0.98 6 15 0.0019 0.16 13.1 2.1 1 23 317 339 317 339 0.98 7 15 0.0026 0.21 12.7 0.4 1 23 374 396 374 396 0.98 8 15 0.00042 0.034 15.2 0.4 1 23 431 453 431 453 0.98 9 15 0.00042 0.034 15.2 0.4 1 23 488 510 488 510 0.98 10 15 0.00042 0.034 15.2 0.4 1 23 545 567 545 567 0.98 11 15 0.0026 0.21 12.7 0.4 1 23 602 624 602 624 0.98 12 15 0.017 1.4 10.1 2.7 1 23 667 689 667 689 0.98 13 15 2.7 2.2e+02 3.2 0.6 1 18 695 712 695 712 0.90 14 15 0.0034 0.28 12.3 2.3 1 23 745 767 745 767 0.98 15 15 0.0001 0.008 17.2 3.3 1 23 773 796 773 796 0.95
Sequence Information
- Coding Sequence
- ATGTCCGGAACATTTGAAACCGTACTTATTAAGGAAGAACCAAAAGATGATGATTTGAAAGAAGAAATTAAGGTGGAAATAGATCCGTATGCTTATCATTTATACCAGGAGAGCAGTGAAGGGGAGGAGGTGCCAGACCCACCTGTTGTACAGAAACCAGCTCTGAAAATAGCACCAcTGATCAGACCATACGCCTGCCAGCTCTGCGAGAAAGCCTACACTTCCAAGCAGCAGTTAACGGTCCACATCCGAACCCACACTGGGGAGAGGCCGTACTCCTGCTCTGTGTGCCGCAAAGGCTTCAAGGCGCGCTGCAAGCTGACGCTGCACGCGCAGACGCACACGGGGGAGAGGCCGCACGTGTGCTCCGTGTGCCGCAGCCGGTACACCACCAAGTACCAGCCTCATAAGCCCCACTTCCGCCCGCACACTGGGGAGAGGCCGTACTCCTGCTGGGTGTGCCGCAAAGGCTTCAAGGCGCGCTGGAAGCTGACGCTGCACGCGCAGACGCACACGGGGGAGAGGCCGCACGTGTGCTCGGTGTGCCGCAGCCGCTACACCACCAAGTACCAGCCACATAAGCCCCACCTCCGCACGCACACGGGTGAGAGGCCGTACGCCTGCCCGGTGTGCCGCAAAGGCTTCAAGGCGCGCTGGAAGCTGACGCTGCACGCGCAGACGCACACGGGGGAGAGGCCGCACGTGTGCTCGGTGTGCCGCAGCCGCTACACCACCAAGTACCAGCAGCATAAGCCCCACTTCCGCACGCACACTGGTGAGAGGCCGTACTCCTGCTCGGTGTGCCGCAAAGGCTTCAAGGCGCGCTGGAAGCTGACGCTGCACGCGCAGACGCACACGGGGGAGAGGCCGCACGTGTGCTCGGTGTGCCGCAGCCGCTACACCACCAAGTACCAGCCCCACTTCCGCCCGCACACTGGACAGAGGCCGTACTCCTGCCCGGTGTGCCGCAAAGGCTTCAAGGCGCGCTGCAAGCTGACGCTGCACGCGCAGACGCACACGGGGGAGAGGCCGCACGTGTGCTCGGTGTGCCGCAGCCGCTACACCACCAAGTACCAGCCTCATAAGCCCCACTTCCGCCCGCACACTGGTGAGAGGCCGTACTCCTGCTGGGTGTGCCGCAAAGGCTTCAAGGCGCGCTGGAAGCTGACGCTGCACGCGCAGACGCACACGGGGGAGAGGCCGCACGTGTGCTCGGTGTGCCGCAGCCGGTACATCACCAAGTACCAGCCTCATAAGCCCCACTTCCGCCCGCACACTGGTGAGAGGCCGTACTCCTGCCCGGTGTGCCGCAAAGGCTTCAAGGCGCGCTGGAAGCTGACGCTGCACGCGCAGACGCACACGGGGGAGAGGCCGCACGTGTGCTCGGTGTGCCGCAGCCGCTACACCACCAAGTACCAGCCTCATAAGCCCCACTTCCGCCCGCACACGCGTGAGAGGCCGTACTCCTGCCCGGTGTGCCGCAAAGGCTTCAAGGCGCGCTGGAAGCTGACGCTGCACGCGCAGACGCACACGGGGGAGAGGCCGCACGTGTGCTCGGTGTGCCGCAGCCGCTACACCACCAAGTACCAGCCTCATAAGCCCCACTTCCGCCCGCACACGCGTGAGAGGCCGTACTCCTGCCCGGTGTGCCGCAAAGGCTTCAAGGCGCGCTGGAAGCTGACGCTGCACGCGCAGACGCACACGGGGGAGAGGCCGCACGTGTGCTCGGTGTGCCGCAGCCGCTACACCACCAAGTACCAGCCTCATAAGCCCCACTTCCGCCCCCACACTGGTGAGAGGCCGTACTCCTGCTGGGTGTGCCGCAAAGGCTTCAAGGCGCGCTGGAAGCTGACGCTGCACGCGCAGACGCACACGGGGGAGAGGCCGCACGTGTGCTCGGTGTGCCGCAGCCGGTACACCACCAAGTACCAGAGCAAATCCGACTCTAATCATAAGCCACATAAGCCCCACTTCCGCCCGCACACTGGACAGAGGCCGTACTACTGCTGGGTGTGCCGCAAAGGCTTCAAGGCGCGCTGCAAGCTGACGCTGCACGCGCAGACGCACACGGGGGAGAGGCCGCACGTGTGCTCGGTGTGCCGCAGCCGCTACACCACCAAGTACCAGGTAAGGAGGTGGCTGATGTACTGTGGCTCTCTGCCGGAGAAGGAGGTCTGTTCATGGTGTCACCAGTTGACAACCCACTACAGACTCCACACGCGAGAAAACCTATTCGAGTGCGAGATATGCGCGCGCCAGTTCGTCGAGCGCTGCAAGCTTGAGCAGCACAAGCGCACACACTTGGCCGTCAAGCCGTTCCCCTGTCCCCATTGCGATAAGGGATACAGTCAGAAGTCGCACCTCAAGTTCCATATTGAGAGCAACCATCCTAATACGTCCAAAGAGGCTAAGGatgacaatgaaaaaaataaatgcacGAAGGACGACAATGAAACCAATAAACCGTCTAAATAG
- Protein Sequence
- MSGTFETVLIKEEPKDDDLKEEIKVEIDPYAYHLYQESSEGEEVPDPPVVQKPALKIAPLIRPYACQLCEKAYTSKQQLTVHIRTHTGERPYSCSVCRKGFKARCKLTLHAQTHTGERPHVCSVCRSRYTTKYQPHKPHFRPHTGERPYSCWVCRKGFKARWKLTLHAQTHTGERPHVCSVCRSRYTTKYQPHKPHLRTHTGERPYACPVCRKGFKARWKLTLHAQTHTGERPHVCSVCRSRYTTKYQQHKPHFRTHTGERPYSCSVCRKGFKARWKLTLHAQTHTGERPHVCSVCRSRYTTKYQPHFRPHTGQRPYSCPVCRKGFKARCKLTLHAQTHTGERPHVCSVCRSRYTTKYQPHKPHFRPHTGERPYSCWVCRKGFKARWKLTLHAQTHTGERPHVCSVCRSRYITKYQPHKPHFRPHTGERPYSCPVCRKGFKARWKLTLHAQTHTGERPHVCSVCRSRYTTKYQPHKPHFRPHTRERPYSCPVCRKGFKARWKLTLHAQTHTGERPHVCSVCRSRYTTKYQPHKPHFRPHTRERPYSCPVCRKGFKARWKLTLHAQTHTGERPHVCSVCRSRYTTKYQPHKPHFRPHTGERPYSCWVCRKGFKARWKLTLHAQTHTGERPHVCSVCRSRYTTKYQSKSDSNHKPHKPHFRPHTGQRPYYCWVCRKGFKARCKLTLHAQTHTGERPHVCSVCRSRYTTKYQVRRWLMYCGSLPEKEVCSWCHQLTTHYRLHTRENLFECEICARQFVERCKLEQHKRTHLAVKPFPCPHCDKGYSQKSHLKFHIESNHPNTSKEAKDDNEKNKCTKDDNETNKPSK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -