Nnoc023497.1
Basic Information
- Insect
- Nomophila noctuella
- Gene Symbol
- -
- Assembly
- GCA_958496325.1
- Location
- OY292510.1:1700197-1706960[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 1.2 93 4.4 2.1 1 23 209 232 209 232 0.97 2 11 0.0026 0.21 12.7 0.7 1 23 239 261 239 261 0.98 3 11 3.2 2.6e+02 3.0 0.1 1 23 265 288 265 288 0.88 4 11 0.069 5.6 8.2 3.9 1 23 295 317 295 317 0.97 5 11 0.0006 0.048 14.7 0.1 2 23 322 344 321 344 0.96 6 11 2.5e-06 0.00021 22.2 0.2 1 23 351 373 351 373 0.99 7 11 0.0028 0.22 12.6 5.7 2 23 380 401 380 401 0.98 8 11 0.014 1.1 10.4 0.5 1 23 412 435 412 435 0.93 9 11 2.6e-05 0.0021 19.0 2.0 1 19 441 459 441 464 0.96 10 11 3.4e-05 0.0028 18.6 0.1 3 23 475 495 474 495 0.98 11 11 0.1 8.2 7.7 0.7 2 19 502 519 501 524 0.92
Sequence Information
- Coding Sequence
- atgtgttgtttaTCTCAAAACACACAATTGGTCAGCTTAGCAACATGTAAACATACAAGATTTTTCGAGTTTTTCAACAATTTCAAGatTAACTATCAATCATCAGTGGTTTGTTACCAATGTCACCacttattaaagaaaatagACGCCTTCCGAACTCAGGTCGACGAAAGTATTAGAATATTATATAATCAGGCTGAAGcatctttaaaaaaacacatacatctGGAATATTCCAAAACAATTTTCACTAATTCAACTGATGAAGAAATCTGCGATGTTAAAATTGAAACCGACATAACAGTAGCCATTAGCCCTGAGGAAGAAAAATATACTGATTTGACAACAGATGTTAAAATCGAGCATGAAAATAGTTCCGATTACGAACCTGATCCGCCGCTGTtagtttataaaaaagaaacaacaaaaaaggtcgttaagaaaaaaaagaaagctgtcaaaaataaaaaggcGGGAAGCAAGACGAAGGAGGTTCAGAAAAAAAGGTCTAATTTGCGCCAGGAGAAGTATGAAGGGAAAATTGTAATAGTAACGTTGACTAGAGAAGAGATGTTGTTAGAAAGAGAGCAATTGGCGAAGAAAGAGTCTTATTTGAAGCTGCCGTATAAATGTGAGAGCTGTATAACTGGGTTCGATCATGAATTGACTTATGAAGATCATATGAAGAAACGGCATGGGGAGaaaaaagaTGGTTTCGTCTGTGAAATCTGCAAGTCGGTGCTAAGCACGCCGACTTCTTACAAGGAACACACTAAGAGACACACCAAAAGGTACgagtgcgcggcgtgcggcaaGCGCAACAACAACGTGTACTCGGTGGCGAAGCACTACAACGACGCGCACGGACGCATCGACACGCAGTTCAGCTGCGACGAGTGCGGGTTCACAACCAACTCTCACCGCGGTTTTCGCTACCACCGCGACAAGCACCGTCAGAAGCAGCAGTGCGCACTCTGCGGGAACACTTTTGTCAATACCGCTGGTTTGCGCGTGCATATGTTCACAGTCCACAAGCAATCCAACCGAGTCTACTCCTGCGATCAGTGCAACAAAGTGTTCGCGGCCAAGTCTGGTTTAACCGCTCACGCGCGCACGCACGCCCCTGCGTACGCGGCGACCTGTGAGACTTGCcgcacgcacttccgcaccgagcagagtcTGGCGCACCATCTAAGGACGCATTCGAGACATTTACGACCGGATGataagaaGTTTGCGTGTACGGAGTGCGAGCGGAAGTTCCTCACGCGGAAGGCTTTGCAGGAGCACGTGAACTTCGTGCATCTCAAGACGAGCAAGTATGAGTGCGACAAGTGCTCCAGGGTATTCAAGAACAACTCGTCGTTAAAGAAACATGATAACTTCGTTCATAAGAAGCTGCGGCCGCCCCGCAACAAAATATGCGACTACTGTGGCAGAGGATTCACGACGTTGGCCATTCTCCGCGCGCATATTCGCACTCACACGGGCGAGCGACCGCTGCGCTGTGCGCATTGCTCGGCGACATTCGCGCACGCCGCTGCGCTTTATACGCACGATAAGCTGCTACATAAGAAATCCAGGGATAAAGATGCTTTTAGCGGATAA
- Protein Sequence
- MCCLSQNTQLVSLATCKHTRFFEFFNNFKINYQSSVVCYQCHHLLKKIDAFRTQVDESIRILYNQAEASLKKHIHLEYSKTIFTNSTDEEICDVKIETDITVAISPEEEKYTDLTTDVKIEHENSSDYEPDPPLLVYKKETTKKVVKKKKKAVKNKKAGSKTKEVQKKRSNLRQEKYEGKIVIVTLTREEMLLEREQLAKKESYLKLPYKCESCITGFDHELTYEDHMKKRHGEKKDGFVCEICKSVLSTPTSYKEHTKRHTKRYECAACGKRNNNVYSVAKHYNDAHGRIDTQFSCDECGFTTNSHRGFRYHRDKHRQKQQCALCGNTFVNTAGLRVHMFTVHKQSNRVYSCDQCNKVFAAKSGLTAHARTHAPAYAATCETCRTHFRTEQSLAHHLRTHSRHLRPDDKKFACTECERKFLTRKALQEHVNFVHLKTSKYECDKCSRVFKNNSSLKKHDNFVHKKLRPPRNKICDYCGRGFTTLAILRAHIRTHTGERPLRCAHCSATFAHAAALYTHDKLLHKKSRDKDAFSG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -