Nnoc023505.1
Basic Information
- Insect
- Nomophila noctuella
- Gene Symbol
- -
- Assembly
- GCA_958496325.1
- Location
- OY292510.1:1781556-1789874[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0034 0.28 12.3 2.1 2 23 220 242 219 242 0.96 2 11 0.0002 0.016 16.2 0.1 1 23 249 271 249 271 0.97 3 11 0.022 1.8 9.8 3.2 1 23 275 298 275 298 0.93 4 11 0.00018 0.014 16.4 0.7 1 23 302 325 302 325 0.97 5 11 7e-05 0.0057 17.6 1.1 1 23 328 351 328 351 0.96 6 11 0.41 33 5.8 2.0 1 23 354 377 354 377 0.90 7 11 0.042 3.4 8.9 0.1 2 20 386 404 385 406 0.93 8 11 0.0086 0.69 11.1 1.6 3 23 421 442 420 442 0.96 9 11 0.021 1.7 9.9 2.4 1 23 448 471 448 471 0.96 10 11 0.00056 0.045 14.8 0.4 3 23 482 502 481 502 0.97 11 11 0.002 0.16 13.1 0.6 1 23 508 531 508 531 0.93
Sequence Information
- Coding Sequence
- ATGGAATCTGAATCAtctgtgtgtgttgtgtgtttaTCTTGTAACACGACGCTCTGGCCTCTTGGAGAATATATGCAGTTATATAAAATGCTGTTAGGAAAAGAAAATGAACATGATATAGACATGaAACCATTTGCGTGTGCTGATTGTCAGAACATGTTTCAAAAGATTCAGATATTCCAACTGAAAATACGAAGTTCTCAGGACATATTGCTGATGAGAGTCAACAGTGAACAAAAGTTGACTGAAGATAAAATAGATTTGAAGGACGAATTTGAGAACCCTAGTAACAACATAGCAGTTGAAATTGACTATTACAAATCCAATGACGATTGTAAAGACGAGCCTTTTGACAACGATTCGGTTCATTTTAATATAGAAGACAACGTTATTGACGATATTAAACAAGAATTTGATGAAGAAAAACAAGAATTTGATATAGAGACGGTCAAAGATGAGAATTTACAAGCAACCAACGTTTACAATAATGTAAAGAAGTATAATAGGAGATCCAAGCAAATATCTTTTAATATAGTGTCTGGTAAAGAATTGATTAAAAGgaattataagtattatataaaaacgttttgtaatgaagatgtaaaGAAGTTAGATGAAGAAGCTAGGATGTCGTGGAGTTTCAGAAATTCTAAGGTCAAATGTAGATCTTGTGTTAAGGGGTTTAATAAGACTGAGAGTTTGCAGAAgcatatgaaaaataaacattctgaGTCCATAGGCCCCTTCGTCTGTGACATATGTGGAGTAAGAACAGCTACTAAAAAATCTCTTGAAAGCCATGTAAACCAACATTACTACAGATACGATTGTTGTCTGTGCGAGCAGAGTTTCTACAAGAAATGGCAATTGAGAATACACTTCAGTATCAGACATAAGAAGGTTTTTGAGTGTCCTAAATGCGGGATTGTTATATCAAAGCGTAGAGAgtttaaaaaacattacaatatGATGCACGAGAGGTTCATATGTGATTACTGCGGCAAGCTGTACACCGATAGACACTGGTTTGAAAACCACATTCTCAAAGTGCATACGTCATTCGAGTGCAAGCCGTGCAACAAAACGTTCAAGTTGTTCAAGAGTTTTGATGCGCACAACAAGTTGCTGCACACGACTGCTGTTTCGGAGAGCACTTACTGCGTCGAATGTGATATACAGTTTGAGAACCAGgTCCGGTACCAGCGGCACATATCAAATAGCACGAGGCATCTTGGAAGGAATAGAAAGAAAAGTGCGAACTGCCCGGAATGCGGAAAACTGTACAGTTGCAGAAGCAATATGATGAATCACTACAGATTGGTACATTTGAAGGTCACAAACTATCAGTGCAAGGATTGCTCAAggTTTTTCCTGAACAGTTTTCGTCTGAAAGAGCATCGACTGGTGAACCACGAGAAGAAAGGCCGTACCAAGAACAAGATCTGCAGTTACTGTGGTCGAGGATTTAGTAATAACCGCATTCTTCTCTACCACGTGCGAACGCATACGGGCGAGAGACCGCATGCCTGCGAGCACTGCTCGGCGACGTTCGCGCAGCCCTTCGCTCTGGCGACGCACGTCAAAGCGAGGCACAAGGACGTCCTCAAGTGA
- Protein Sequence
- MESESSVCVVCLSCNTTLWPLGEYMQLYKMLLGKENEHDIDMKPFACADCQNMFQKIQIFQLKIRSSQDILLMRVNSEQKLTEDKIDLKDEFENPSNNIAVEIDYYKSNDDCKDEPFDNDSVHFNIEDNVIDDIKQEFDEEKQEFDIETVKDENLQATNVYNNVKKYNRRSKQISFNIVSGKELIKRNYKYYIKTFCNEDVKKLDEEARMSWSFRNSKVKCRSCVKGFNKTESLQKHMKNKHSESIGPFVCDICGVRTATKKSLESHVNQHYYRYDCCLCEQSFYKKWQLRIHFSIRHKKVFECPKCGIVISKRREFKKHYNMMHERFICDYCGKLYTDRHWFENHILKVHTSFECKPCNKTFKLFKSFDAHNKLLHTTAVSESTYCVECDIQFENQVRYQRHISNSTRHLGRNRKKSANCPECGKLYSCRSNMMNHYRLVHLKVTNYQCKDCSRFFLNSFRLKEHRLVNHEKKGRTKNKICSYCGRGFSNNRILLYHVRTHTGERPHACEHCSATFAQPFALATHVKARHKDVLK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -