Basic Information

Insect: Nomophila noctuella
Gene Symbol: salm
Assembly: GCA_958496325.1
Location: OY292485.1:7982264-8003618[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 4.2 3.4e+02 2.6 1.0 1 17 49 65 49 70 0.83

2 8 4.4e-06 0.00035 21.4 0.9 1 23 366 388 366 388 0.98

3 8 8.7e-06 0.0007 20.5 2.1 1 23 394 416 394 416 0.98

4 8 0.0018 0.15 13.2 1.9 2 23 673 694 672 694 0.97

5 8 0.026 2.1 9.6 1.6 1 14 700 713 700 714 0.94

6 8 0.69 56 5.1 0.0 10 23 741 754 739 754 0.93

7 8 3.9e-06 0.00032 21.6 1.7 3 23 836 856 834 856 0.96

8 8 4.7e-07 3.8e-05 24.5 0.5 1 23 862 884 862 884 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	4.2	3.4e+02	2.6	1.0	1	17	49	65	49	70	0.83
2	8	4.4e-06	0.00035	21.4	0.9	1	23	366	388	366	388	0.98
3	8	8.7e-06	0.0007	20.5	2.1	1	23	394	416	394	416	0.98
4	8	0.0018	0.15	13.2	1.9	2	23	673	694	672	694	0.97
5	8	0.026	2.1	9.6	1.6	1	14	700	713	700	714	0.94
6	8	0.69	56	5.1	0.0	10	23	741	754	739	754	0.93
7	8	3.9e-06	0.00032	21.6	1.7	3	23	836	856	834	856	0.96
8	8	4.7e-07	3.8e-05	24.5	0.5	1	23	862	884	862	884	0.98

Sequence Information

Coding Sequence: ATGATTCAGTTAGCGACGATTAAATTCGGCATCCACCAGAAAGTGAGCACTAAATCCCGCTTGCAGCGCGGTGAGAGTTCCGGATCGTGCTCGGAAGAAGAAATAAACAATGCATCTGATGAGGTCAGAGACCGCCCCGAGCCGCACATGTGTCCGCGCTGCCAGGAGCAGTTCGAGAGCCTGCACGAGTTCCTCTTCCACAAGCGGCTCTGCGATGAGAAAGCGCTCCAGATGGGAGAAGAGAGGATGCACTCCGACCCCGAGGAGATGGTCGTCTCTGGAGACGAAGAAATGGATGGCCCTAACAAACGATTAGAGCAAGTGAGGCGGCATCGACAAGATGCTGAGAATAATAATAGTCTAGAAGACGGCGAGGCGGAAGTGCCCGAAGCCGACGTGCCGCCAGTCGGCCTGCCCTTCCCGGTAGCCGGCCACGTCACACTGGAGGCATTACAAAACACAAAAGTAGCCGTCGCACAGTTCGCCGCCACAGCCATGGCCAACAACGCAGACAATGAAGCCGCCCTGCACGAGCTGGCCGTACTACAGAGTACGCTATTTACACTGCAACACCAGCAAGTGTTCCAACTACAATTGATCCGACAACTTCAGAACCAGCTCTCGCTGACGCGACGAAAAGACAGTCCTCCTCCGAGCGAGCCGGAGCCGATCCTGCCAGCGCCCACCGCTCGatcgccgtcgccgccgcgtcCGCCACGGGAGCCAACTCCTGCTGCACCCACTCCTCCCTCTAGCCAAAGCTTGCCCTCCACACATGCGCATCTCACTCCTAAAGCGGAACCACTATCCGTTCCCAAACTCCCGACATCATCACCACCTATGATGTCACATCCACCCTATAGCTCCATATCGTCATCATTAGCGTCATCGATAATAACAAACAATGATCCTCCGCCGTCCCTCAATGAACCCAACACATTAGAGATGTTACAAAAACGTGCACAAGAAGTACTCGATAATGCTTCGCAAGGATTGCTAGCGAATAATCTTGCCGACGAATTAGCTTTTCGAAAGTCCGGAAAAATGTCTCCGTACGATGGAAAATCCGGTGGACGCAACGAGCCTTTCTTCAAGCACCGCTGCCGATACTGCGGGAAAGTTTTTGGAAGCGATTCTGCGCTGCAAATTCACATTCGTTCACACACGGGCGAACGACCATTCAAATGTAACGTCTGTGGATCTCGATTTACGACCAAAGGAAATCTGAAAGTTCATTTCCAAAGACATACTGCGAAATTCCCGCATGTCAAAATGAATCCTAACCCAGTACCAGAGCATTTGGACAAGTATCATCCACCGCTATTAGCCCAGCTATCACCGGGGCCCATCCCCGGCATGCCACCCCACCCGCTGCAGTTCCCCCCGGGCGCGCCAGCTCCATTCCCGCCAAGCTTGCCGCTGTACAGGCCGCCGCACCACGACTTATTACCACCTCGCCCGCTTGGGGACAAGCCTCTTCCACCTCATCCGCTTTTCGCAATGCGAGAAGAACAAGACGCTCCGGCTGATCTCAGTAAACCCTCCGCGCCGAGCCCTTCTCGATCTTCATCCGATGTCATTAAATCAGAACCACAAGATGAAGAGAGCCATCGAGATTCTAGTTTCGAAGAAACTGACCGTGTATCGCCAAAGCGCGAACCGGAAGAAAATGAGACTGCACCAGAAAATGAACAAGACAGATATCCATCGACGTCACCTTATGATGACTGCAGCATGGACTCAAAGTACAGCAACGAAGATCAAATCGGCAGAGAAAGTCCACACATGAAGCCCGATCCCGACCAACCGGAAAATCTCTCAAGTTCGGAGAGCGGGAGGAGCGCGCGGGCCTCGCCGCCGTCGCCGACGATGTCGACGCTGTCGACGCCGCCGCGGCCTCCGCCGCACTCGCCGCAGCcgtcgccgcccgcgcccctGGCGGCGCTCGGCGCTCTCGGCGGATCACCCTTCAGCCCGCTCGGACTCGCGTTTCCTCCCGCAGTGCGCGGCAACACAACGTGTAACATCTGCTACAAGACGTTCGCCTGCAACTCGGCGCTCGAGATTCATTACCGGAGCCACACCAAGGAACGGCCTTTTAAGTGCACCGTCTGTGATCGCGGTTTTTCTACAAAGAGCAGTGGCGGCGGGTGCCGATGCGGGAGGCGCGCGCGCGCACCCCGCCCTCCGCACGCCACTGCTTTGGATTTCTGGAACGCCTTCGTCTATCCGGGCAACATGAAACAGCACATGCTGACGCACAAGATCCGCGACATGCCGCCCGGATTCGACAAGGGCCCGGGTTCGACGCAGAGCGAGGACACGCGGGAGTCCAGCCCGGACCGGCGGTCGTCCCCTGACAAAATGGACATGAAGCGATCGCCGCCGGTCCACCCGCCGACCATGACGCACGCGCCGCCGTTGGATATGCCGCCGATGCCGAAACGACCGAGTGTGCCAAGTGGACCTACACACGCGCCTCCCCCCGCGTCCTCCAAGCATCTATGCGGCGTGTGCCGCAAGAACTTCTCCTCATCATCGGCCCTGCAGATCCACATGCGCACACACACCGGCGACAAACCGTTCCGGTGTGCCGTCTGCCAAAAAGCTTTCACCACCAAAGGGAACCTCaagGTGCACATGGGCACGCACATGTGGAGCGGCGGCGCGTCGCGTCGCGGGCGGCGCATGTCGCTGGAGCTGCCGCCGCGGCCGCTGCACGAGCCGCACGACCTGCTGCGCCGCCCCGACCTCTTCTACCCCTACCTGCCCGCGCCCTTCCTCAACGGCATGCAGCAAAAGCTGAACGAAATATCAGTGATACAACAGAGCGCGGGCCAAAACGGAGTCGCCGGCAAGTTCCCGGGTCTGCTCGGGTTCGGCGCGTTCGGCGGCGGGCGGGCGGGCGCCGCGTCGCCGCTGGAGCGGCCGCCGTCGCTGGAGGGCGGCGACGAGCGGCAGGCGGCCATGCGCGAGCTGGCGGAGCGCGGGCGCGAGCTGGCGGAGCGCAGCCGGCAGCTGCGCGAGGAGAGCGAGTACCGCGGCGGCGCGCACGGGGCGCACGGCGGGCACGCGGCGCACGGCgggcacgcgccgccgcccgcgcaggcgtcgccgcccgcgccgcaccaCGCGCTGCCGCACCCGctggcgccgctgccgccgcccgcgcgcacCGAGGGGCTCACCGTCTGA
Protein Sequence: MIQLATIKFGIHQKVSTKSRLQRGESSGSCSEEEINNASDEVRDRPEPHMCPRCQEQFESLHEFLFHKRLCDEKALQMGEERMHSDPEEMVVSGDEEMDGPNKRLEQVRRHRQDAENNNSLEDGEAEVPEADVPPVGLPFPVAGHVTLEALQNTKVAVAQFAATAMANNADNEAALHELAVLQSTLFTLQHQQVFQLQLIRQLQNQLSLTRRKDSPPPSEPEPILPAPTARSPSPPRPPREPTPAAPTPPSSQSLPSTHAHLTPKAEPLSVPKLPTSSPPMMSHPPYSSISSSLASSIITNNDPPPSLNEPNTLEMLQKRAQEVLDNASQGLLANNLADELAFRKSGKMSPYDGKSGGRNEPFFKHRCRYCGKVFGSDSALQIHIRSHTGERPFKCNVCGSRFTTKGNLKVHFQRHTAKFPHVKMNPNPVPEHLDKYHPPLLAQLSPGPIPGMPPHPLQFPPGAPAPFPPSLPLYRPPHHDLLPPRPLGDKPLPPHPLFAMREEQDAPADLSKPSAPSPSRSSSDVIKSEPQDEESHRDSSFEETDRVSPKREPEENETAPENEQDRYPSTSPYDDCSMDSKYSNEDQIGRESPHMKPDPDQPENLSSSESGRSARASPPSPTMSTLSTPPRPPPHSPQPSPPAPLAALGALGGSPFSPLGLAFPPAVRGNTTCNICYKTFACNSALEIHYRSHTKERPFKCTVCDRGFSTKSSGGGCRCGRRARAPRPPHATALDFWNAFVYPGNMKQHMLTHKIRDMPPGFDKGPGSTQSEDTRESSPDRRSSPDKMDMKRSPPVHPPTMTHAPPLDMPPMPKRPSVPSGPTHAPPPASSKHLCGVCRKNFSSSSALQIHMRTHTGDKPFRCAVCQKAFTTKGNLKVHMGTHMWSGGASRRGRRMSLELPPRPLHEPHDLLRRPDLFYPYLPAPFLNGMQQKLNEISVIQQSAGQNGVAGKFPGLLGFGAFGGGRAGAASPLERPPSLEGGDERQAAMRELAERGRELAERSRQLREESEYRGGAHGAHGGHAAHGGHAPPPAQASPPAPHHALPHPLAPLPPPARTEGLTV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00622287;
90% Identity: iTF_00042954;
80% Identity: -