Nnoc023148.3
Basic Information
- Insect
- Nomophila noctuella
- Gene Symbol
- -
- Assembly
- GCA_958496325.1
- Location
- OY292509.1:4814590-4834368[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.75 60 5.0 2.9 1 23 316 338 316 338 0.97 2 11 0.26 21 6.4 0.0 3 23 362 383 360 383 0.95 3 11 0.00018 0.014 16.4 0.4 3 23 407 427 405 427 0.95 4 11 0.0093 0.75 11.0 0.3 2 23 432 453 431 453 0.96 5 11 0.00023 0.018 16.0 2.9 1 23 462 485 462 485 0.95 6 11 1.7 1.4e+02 3.9 1.0 1 12 491 502 491 506 0.84 7 11 0.015 1.2 10.4 0.6 1 23 511 534 511 534 0.94 8 11 0.00016 0.013 16.5 0.9 1 23 540 563 540 563 0.97 9 11 0.00011 0.0089 17.0 0.3 1 23 569 591 569 591 0.97 10 11 4.4e-06 0.00036 21.4 0.4 1 23 597 619 597 619 0.98 11 11 0.00098 0.079 14.0 5.7 1 23 625 648 625 648 0.98
Sequence Information
- Coding Sequence
- atgagtGTTTCCAAGAAAGGTCCAGTGGTGGACGGAGGGCTGTGCCGCTGCTGCGGCGCCGTGAAGCGCTGCCGGCTGCTGAACGTCGAGTACGAGTGGAACGGAGTGAAAGAGATCTATTCCGAAATGTTTTTAGACTGTTTTGGGCTTTGCCTATCACACCTAGACGGAGAGCAGTCCGAAAGGCTCATATGTGCAACGTGTGTGATGCGGTTGAGGGACGCTAGCTCGTTCCGCTGCCAAGTGCTGCAGTGTGAGGAGAAGCTGTTGCAAGCGCAGATACACGTTGACGGTGATGAGTACCCTCCTTTGTCAGATATCAAAACAGAGCCTGAGATAAAAGAAGAGAATGACAACTGCGATTCAATGCCGGAGGGAGACGACCATGTCGACGCAGATATCGGTGAACAGACACACTCGCAGGATGAAGTGCCAATAGAAGAGGCGACCACATGGGTCTGTGATTCCCGCGAGTCGCCCGCGTCGGCTCGGGCGAAGCGAGCGGCTCGTCGGAGCGGCCGCGAGTTTCTCGCCACCCTTAACACTATGAGAGATAAGCTGAAGAAGCTGCAAGGGGAAACTACTGAAAGCACGGAGGCGGCACCTCCCCCTCCCCCTGCCCCCCCTGTCCCGCGCCCGTGGAAGTCGTCGGAGCAGAAGGCTTTCCACAACACGTGCGTGCTGGTGGAGAACTCGTACGTCTGCCCGTTCGTCACGGTCTTCAGCGACTACCACTGCGTGTACTGCAAGCGACTACCACTGCGTGTACTGCAAGGTGAGCGCCCGAGGTGGCTGCATGTGAGGCCTtgcctccccccccccctcccccccctccaCAACACGTGCGTGCTGGTGGAGAACTCGTACGTCTGCCCGTTCGTCACGGTCTTCAGCGACTACCACTGCGTGTACTGCAAGGTGAGCGCCCGAGGTGGCTGCATCGACTACCACTGCGTGTACTGCAAGGAACTCCACACGGATCCAGAAACTCTTCGGGAGCACACAATGACGCACGACCCCTCAACATATAAGGATAACGTGATATACAAGAGATCCATACAAGTTGACATAGCGAGAATAGACTGCCGTCTATGCCCAAAACCCATAGATAATCTAGAAGATTTTTATACACACATAGCAACGGCACATGACAAAATGCTCTATCCTAATATTAAGaatgcatttttaaaatttaaattgaagttAGGTAATCTAGATTGTATGGAATGTGGTGTGGTTTTTAGCTATTTTCATGCACTAAAGAGACATATGGCGGAACATTTTGGAACTTGGATCTGTGATGTATGTGGGGCGCATTTCTTTGAGGAGAATAAACTTATTGTGCATCAGAAGAGTCATCAGAGTCAAAAGGCTGAGGATAGGTACCCTTGCAAGGATTGCGGCAAAGTGTTCAAGTCTAAACACGGTCGATACTACCACATATCGCGTCAGCACAGCGATACACCTACATACCCTTGTTATAAGTGTGATGAGGTGTTCTTCTCTTATACGTTGAGCGATACTCCAACGTACCCTTGTTATAAGTGTGATGAGGTGTTCTTCTCTTATACTTTGAGGTACAGGCACATGATAGAGGCCCACGGGGAACAGCGTAAGTTCCCATGTTCGAGCTGCGACAAAGTCTACGACACGCGCAAAAGCCTGCGAGAACACAACCGCAAGGCGCATCTCAAGGTGCTGCGGCACGAATGCGCCGTCTGCGAGAAGAAATTCTACCTGCCGTCGGCTTTGAAGGACCATATGGCATCACACACAGGCGAGCGCAACTTCCGCTGCGAGTACTGCGGCAAGAGCTACCCGCGCCTGCGCGCGCTGCGGGTGCACGCGCAGTCGCACGCGCAGGACAAGCGGCACAAGTGCCACGTCTGCAGCGCCGCTTACACGCAGGGTAACAACCTGAAGCATCACATACGCACGAAACATCCGCATCTGAATGTGGAGTGA
- Protein Sequence
- MSVSKKGPVVDGGLCRCCGAVKRCRLLNVEYEWNGVKEIYSEMFLDCFGLCLSHLDGEQSERLICATCVMRLRDASSFRCQVLQCEEKLLQAQIHVDGDEYPPLSDIKTEPEIKEENDNCDSMPEGDDHVDADIGEQTHSQDEVPIEEATTWVCDSRESPASARAKRAARRSGREFLATLNTMRDKLKKLQGETTESTEAAPPPPPAPPVPRPWKSSEQKAFHNTCVLVENSYVCPFVTVFSDYHCVYCKRLPLRVLQGERPRWLHVRPCLPPPLPPLHNTCVLVENSYVCPFVTVFSDYHCVYCKVSARGGCIDYHCVYCKELHTDPETLREHTMTHDPSTYKDNVIYKRSIQVDIARIDCRLCPKPIDNLEDFYTHIATAHDKMLYPNIKNAFLKFKLKLGNLDCMECGVVFSYFHALKRHMAEHFGTWICDVCGAHFFEENKLIVHQKSHQSQKAEDRYPCKDCGKVFKSKHGRYYHISRQHSDTPTYPCYKCDEVFFSYTLSDTPTYPCYKCDEVFFSYTLRYRHMIEAHGEQRKFPCSSCDKVYDTRKSLREHNRKAHLKVLRHECAVCEKKFYLPSALKDHMASHTGERNFRCEYCGKSYPRLRALRVHAQSHAQDKRHKCHVCSAAYTQGNNLKHHIRTKHPHLNVE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -