Basic Information

Insect: Nomophila noctuella
Gene Symbol: -
Assembly: GCA_958496325.1
Location: OY292508.1:7243346-7245378[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.021 1.7 9.8 0.0 2 23 219 241 218 241 0.95

2 9 0.029 2.4 9.4 0.4 3 23 278 299 277 299 0.97

3 9 0.0077 0.62 11.2 0.2 3 21 307 325 306 326 0.94

4 9 3.8e-06 0.00031 21.6 0.8 2 23 350 371 349 371 0.96

5 9 1.8e-06 0.00014 22.7 1.2 1 23 379 401 379 401 0.98

6 9 0.0021 0.17 13.0 1.5 1 23 407 429 407 429 0.97

7 9 1.6e-05 0.0013 19.7 2.2 1 23 435 457 435 457 0.97

8 9 0.00071 0.057 14.5 2.3 1 23 463 485 463 485 0.98

9 9 1.3e-06 0.0001 23.1 4.7 1 23 491 514 491 514 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.021	1.7	9.8	0.0	2	23	219	241	218	241	0.95
2	9	0.029	2.4	9.4	0.4	3	23	278	299	277	299	0.97
3	9	0.0077	0.62	11.2	0.2	3	21	307	325	306	326	0.94
4	9	3.8e-06	0.00031	21.6	0.8	2	23	350	371	349	371	0.96
5	9	1.8e-06	0.00014	22.7	1.2	1	23	379	401	379	401	0.98
6	9	0.0021	0.17	13.0	1.5	1	23	407	429	407	429	0.97
7	9	1.6e-05	0.0013	19.7	2.2	1	23	435	457	435	457	0.97
8	9	0.00071	0.057	14.5	2.3	1	23	463	485	463	485	0.98
9	9	1.3e-06	0.0001	23.1	4.7	1	23	491	514	491	514	0.98

Sequence Information

Coding Sequence: ATGGAAAGCGTAGTAAATACATATTGCCGCTTCTGTGCGGAACCTAAGAGTCCTAACAAAGTGTTAAACTTACAAAACGATGGCGAAAAATGCGACGAAGTACTTCTCAAACTTGCTTTCTTAAACGCTCTTTACGTAGACGTTAATAATGACAATATTCTGCCAAAAACCGTATGTTTTGTATGCTACGACTCTCTGAATAAAGCTTACGAGTTCCTTGATAGAGTAAAGAAGTCTCAGGCAGTGTTATCCAGCCTATTTTCACAGAATGATGATAGCAAATGTTATGCTTCAGATGACGATCGTAATGAAgtttttgatgatatttttcaTAACGATGATGCAGATGTTGGCCCTTACGTTAAGCAAGAGACAAAAAGCATCACTCCCCTTGACTCTACTGGCATGTACGACGACGTAACTATCAAGGATGAGCCAAAAGAAGAGATACAAGACACAAGCATGTTACTGGATTCAGTTATTTCTGCAGACAACTCCGGAATGGAAAACGATAACAATGAATCGTTAAATGTACAGGATATAATCGATGCGGCTATGTCAAACGCTTCTTTAAagtcaaatattaaattatacgcAAAAGATATATCGGAACTGAGTAAAAAAGATATTTCAAGTTGGAAAGATTATCCTTGGGTCTGCGGGTTTTGTAACATTGAATTTATAGATATAGACATGCTCCGGTCACATGCTAAAGTTGTCCATGGGAAGTGCTCAGCGTTCATGTGTGTTGATTGTAAGACTATGAGGAAGGATACATTTACATCGTTCATGAAACATATCAGAAAGCATAGAAAGAATTtgagGAACTTTTGCTACTACTGCAACGCCGATCTTGACACAAAAGGGACCCTTAGCAGCCACATTAAAACCGAGCACATACAGAATTCACACAAAGCCTGCTCTCTCTGCGGTGAGATATTTAAGAACGAAGTCTGCCTCCAACTGCATTTACAAGAGTTTACTCTTGTTAAGAGAAAGCGAAGGCCCAGAAGAAAACCTGGGACCCCAATAACGATAGAAGAACTAACATGCCAGATATGTAAGAAGGTTTATAAGAACCCAAACAGTCTGCGAGACCATATGAAACTTCACACGGAAGATAGAAAGAGGAATTACACCTGTGACAGATGCGGTAAAATGTTCTTCAATAAAGGAACGTTGACTTCTCATATAATGTCGCATGATAAAATCAGACCGCATGTATGTAGGATATGTAATAAATCTTTCTTGTTTCCGAACATGTTGAGAAGGCACGTTGAAATGCATTCCGGGGTTAAACCGTTTTCCTGTGAGCAATGTGGGAGGTGTTTCCGCCTGCAATACCAGTTGAATGCTCACAAAATTGTCCATACAGACTCAATGCCATATGTATGTCAGTATTGTAACAAAGCGTTCCGTTTCAAGCAAATATTAAAGAACCATGAACGACAACACACCGGTGCTAAACCATATTCTTGTTCACATTGTAACATGGAATTTACTAACTGGTCCAATTATAACAAACATATGAAGAGACGGCATGGAATGGATACTTCCAAGAAAAAAATCACACCCGAAGGAGTGTTTCCTATTAATCCGGAGACGGGACAGATTATGCAGGTTCAAGACCCGGTTGGGACTGAAGAGTGGAAGAATAAGATCATGATACCAGGAAAGAGGGGGAAAAAGAAAATCAAGGTGGAGACTGAAGGGAGCTAG
Protein Sequence: MESVVNTYCRFCAEPKSPNKVLNLQNDGEKCDEVLLKLAFLNALYVDVNNDNILPKTVCFVCYDSLNKAYEFLDRVKKSQAVLSSLFSQNDDSKCYASDDDRNEVFDDIFHNDDADVGPYVKQETKSITPLDSTGMYDDVTIKDEPKEEIQDTSMLLDSVISADNSGMENDNNESLNVQDIIDAAMSNASLKSNIKLYAKDISELSKKDISSWKDYPWVCGFCNIEFIDIDMLRSHAKVVHGKCSAFMCVDCKTMRKDTFTSFMKHIRKHRKNLRNFCYYCNADLDTKGTLSSHIKTEHIQNSHKACSLCGEIFKNEVCLQLHLQEFTLVKRKRRPRRKPGTPITIEELTCQICKKVYKNPNSLRDHMKLHTEDRKRNYTCDRCGKMFFNKGTLTSHIMSHDKIRPHVCRICNKSFLFPNMLRRHVEMHSGVKPFSCEQCGRCFRLQYQLNAHKIVHTDSMPYVCQYCNKAFRFKQILKNHERQHTGAKPYSCSHCNMEFTNWSNYNKHMKRRHGMDTSKKKITPEGVFPINPETGQIMQVQDPVGTEEWKNKIMIPGKRGKKKIKVETEGS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00961208;
90% Identity: -
80% Identity: -