Basic Information

Insect: Nomophila noctuella
Gene Symbol: -
Assembly: GCA_958496325.1
Location: OY292491.1:14443036-14446501[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 3.3e-06 0.00027 21.8 2.3 2 23 121 142 120 142 0.96

2 9 1.1e-05 0.00089 20.2 2.8 1 23 148 170 148 170 0.99

3 9 0.00019 0.016 16.3 0.4 2 20 177 195 176 195 0.95

4 9 4.3e-05 0.0035 18.3 3.1 1 23 194 216 194 216 0.98

5 9 0.00019 0.016 16.3 0.4 2 20 223 241 222 241 0.95

6 9 4.3e-05 0.0035 18.3 3.1 1 23 240 262 240 262 0.98

7 9 4.8e-05 0.0039 18.2 2.0 2 23 269 290 268 290 0.97

8 9 9.1e-05 0.0073 17.3 0.4 2 21 297 316 296 317 0.93

9 9 9.1e-05 0.0073 17.3 0.4 2 21 338 357 337 358 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	3.3e-06	0.00027	21.8	2.3	2	23	121	142	120	142	0.96
2	9	1.1e-05	0.00089	20.2	2.8	1	23	148	170	148	170	0.99
3	9	0.00019	0.016	16.3	0.4	2	20	177	195	176	195	0.95
4	9	4.3e-05	0.0035	18.3	3.1	1	23	194	216	194	216	0.98
5	9	0.00019	0.016	16.3	0.4	2	20	223	241	222	241	0.95
6	9	4.3e-05	0.0035	18.3	3.1	1	23	240	262	240	262	0.98
7	9	4.8e-05	0.0039	18.2	2.0	2	23	269	290	268	290	0.97
8	9	9.1e-05	0.0073	17.3	0.4	2	21	297	316	296	317	0.93
9	9	9.1e-05	0.0073	17.3	0.4	2	21	338	357	337	358	0.93

Sequence Information

Coding Sequence: ATGAGTGGTCTTAACAAGCAGACACACGGACAAGCCCCGCCCACCGCCGTGCACGCCGCCCACTCGCACACGCAAGCGGAGCGGACGACCTATAGTAGGATGCTGACTGCCAAGATTATTAAGAAGGAGGAGAAAGCGGACATCACTGAGACGTCGATAGGTGCGCTAGATTCAAAGGAAGCGATCGCGACGTCAATCCTGCAGGAGTTCGATGTGCTGAACGAGGCCAAGCCGAAGATCGAGGGGCTCATCAAGCAGGAGGCCAAGCCGAGGCGGAAGCGAGACTTCGTTTGTCCCACCTGCAAGGTCGACCAGTTGACGGACGTGGCTTTCCACGCGCATCTTAAGATCCATCCGCTGGAGTGCCTGCGCTGCGGGAAGTGCTTCTCCAGGAGAGCGAACTTAGCCTTGCACACGAAAACGCACTTAGGAATAAAGAATTACAAATGCGAGGTGTGCGAGAAGAGGTTCGTGACGAAGCAGAAGCTGCAGGAGCACCACAACGTGCACACCGGCCGCGCGCCCGTCAAGTGCACCGTCTGCGACACCACCTTCCGCCGCTACTCCAACATGCTGGCGCACAGATGCGAGGTGTGCGAGAAGAGGTTCGTGACGAAGCAGAAGCTGCAGGAGCACCACAACGTGCACACCGGCCGCGCGCCCGTCAAGTGCACCGTCTGCGACACCACCTTCCGCCGCTACTCCAACATGCTGGCGCACAGATGCGAGGTGTGCGAGAAGAGGTTCGTGACGAAGCAGAAGCTGCAGGAGCACCACAACGTGCACACCGGCCGCGCGCCCGTCAAATGCGAGGTGTGCGAGAAGAGGTTCGTGACGAAGCAGAAGCTGCAGGAGCACCACAACGTGCACACCGGCCGCGCGCCCGTCAAGTGCACCGTCTGCGACACCACCTTCCGCCGCTACTCCAACATGCTGGCGCACAGGTACACCCGGGCTCTAGCGGTGAAGCTGCAGGAGCACCACAACGTGCACACCGGCCGCGCGCCCGTCAAGTGCACCGTCTGCGACACCACCTTCCGCCGCTACTCCAACATGCTGGCGCACAGGTACACCCGGGCTCTAGCGGTGGTGACAGTGGCGACAGTGGCGAGAGTGTGA
Protein Sequence: MSGLNKQTHGQAPPTAVHAAHSHTQAERTTYSRMLTAKIIKKEEKADITETSIGALDSKEAIATSILQEFDVLNEAKPKIEGLIKQEAKPRRKRDFVCPTCKVDQLTDVAFHAHLKIHPLECLRCGKCFSRRANLALHTKTHLGIKNYKCEVCEKRFVTKQKLQEHHNVHTGRAPVKCTVCDTTFRRYSNMLAHRCEVCEKRFVTKQKLQEHHNVHTGRAPVKCTVCDTTFRRYSNMLAHRCEVCEKRFVTKQKLQEHHNVHTGRAPVKCEVCEKRFVTKQKLQEHHNVHTGRAPVKCTVCDTTFRRYSNMLAHRYTRALAVKLQEHHNVHTGRAPVKCTVCDTTFRRYSNMLAHRYTRALAVVTVATVARV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -