Nnoc023135.1
Basic Information
- Insect
- Nomophila noctuella
- Gene Symbol
- -
- Assembly
- GCA_958496325.1
- Location
- OY292509.1:4687125-4690287[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 6.6 5.3e+02 2.0 0.7 1 23 84 108 84 108 0.81 2 19 1.9 1.5e+02 3.7 0.0 2 23 135 157 134 157 0.86 3 19 0.82 66 4.9 0.7 1 23 179 201 179 201 0.97 4 19 4.4 3.6e+02 2.6 2.7 1 23 205 227 205 227 0.95 5 19 0.86 69 4.8 0.1 1 12 232 243 232 246 0.90 6 19 0.014 1.1 10.5 2.1 2 23 263 285 262 285 0.96 7 19 0.0099 0.8 10.9 4.0 1 23 292 315 292 315 0.98 8 19 0.00045 0.036 15.1 2.4 1 23 321 343 321 343 0.98 9 19 3.5e-06 0.00028 21.8 1.5 1 23 349 371 349 371 0.99 10 19 8.7 7e+02 1.6 1.3 1 23 434 457 434 457 0.91 11 19 0.57 46 5.3 0.1 2 23 484 506 483 506 0.93 12 19 0.00057 0.046 14.8 0.4 2 23 531 552 530 552 0.97 13 19 9.5e-05 0.0076 17.2 0.1 1 23 556 578 556 578 0.97 14 19 0.0085 0.68 11.1 2.7 1 23 583 606 583 606 0.96 15 19 0.017 1.3 10.2 1.2 2 23 614 636 613 636 0.95 16 19 0.0001 0.0084 17.1 1.2 2 23 644 666 643 666 0.96 17 19 0.00049 0.04 15.0 3.1 1 23 672 694 672 694 0.97 18 19 1.1e-05 0.00092 20.1 1.3 1 23 700 722 700 722 0.99 19 19 0.00077 0.062 14.4 3.0 1 23 728 751 728 751 0.96
Sequence Information
- Coding Sequence
- ATGGGCAGCACGGATATAGGCATAGTAGATACAACAGTGAAAAGAGTGttaaaaattactaaaactGGGAAAGCAAAGGTTAAACAAAATGACTGGACGGTGAcgattaagaaaaaaaagtctGTGAGTAAAGAAGGGACGAAAAAGTCGATAGCAGATGTAAAAGAGATGGACAAGCATCGGCAGAATTTGATACAAATTCTTCTAAATACCAACGCTACTCCTATAAGGAATTTTGACGGATTAGGTTACACTTGCTCGTTTTGTCTGAATAGCTCGTTTCCCGATATCAGAGAGTTAAAAAAGCACACTTTAGATCAGCACGATGATTCGGATAAAAGAAATTTCATGTTGAACTATCCTTTAGCTGCGTATGTGGTGAAACTAGATGTTACGTCACTCAAATGCGTTATATGCGGCAAAGAAATATTGACAATAGAGGAAATGGTGAAGCATTTGATGATGGAACATGATAGGACTCTCCACACTGATATAAAGAACCGTATGCTTCCGTTCAACTTTGTGGATGACGTTTTCGAATGTGTTCTTTGCCAGAAGAAGATAGAGCATTTGAAAGTTATGCAGGAGCACTTAAATGTGCACTACGGGAGTTTTTTCTGCGAGGAGTGTTCTGCTCCGTTCATGACGGAGAGAAGGCTGAAGTGTCACGTAAAAAGGCATCAAAAAGGAGAGTTCCCTTGCTCAATATGTTCGAAGATTTTCGATACGATTCTGAGAAGAGACGACCATACGAAGGCTGTGCACGGAGGAGCGAATAAGAGGAACAAATGCCCGATATGTTCGGAGAAGTTTTATTCGCACTATAAGAAGCAGGAGCATATGGCTCGTGAACACGGAATGGAGAAGACTTCGTATAAGTGTATGGCGTGTGATAAATCCTTTGCTTGTAATAGTAGATTGAACAAGCATAGAAGACGAGATCACCTTATGGAGAGATGCCACGAATGCCAGCAGTGTGATAAGAAATTCTTCGCATTAAAAGGACTGCAGCAACATATGCTGACCCATACTGGGATTAAAGAATTTCAATGTGATGTGTGCCTTAAGTCCTACCAGAGAAAGTCGACTTTGCGAGAGCATATGAGGATACATGAAGATGATAGAAGATTCAAGTGTGTCCGACTGAAACGTACAGTCAAAACCGAAGGGTTAAGACCTAGAGGATACTTTCCGGAGGACACGAAACAGATATCCGAACTGGAGAAGCATCGGGCAAACATCAGATTATTGTTGCAATGTTCCAACGCTACCCCGATACGATGCAGAGGCGGCATCGGGTATGCTTGCTGCTTCTGCCGAGATCAATATCCCAAGGCGGCTGATCTGAAAACTCACACGATACAACAACATGATGATAAAACCAAACTCAGATTCATGAAGGGGAAAATGATGTATGCTTTCTTAGTCAGATTAGACATAACCGGGCTTCAATGCAAAATTTGCAGCGAAAGTATGAATACGCTAGAGGATATTATGACGCATCTACTCAATGTCCACGAAAAACATGTCTACACTGATATTAAAAACCACGTTCTCCCGTTCAAATTCGATGATAAAGCTCCTGCTTTAACTTGTGCGATGTGTCCGAACACTTTTAACAGGTTCAAAGCTCTCTTAGAACACATGAACACGCATTACAGGAATTACGTTTGCGACTTCTGTGACGCTGGTTTCGTGACTCGAAACAATTTGGTAAATCACATGGAAGCGCATAAGACTGGCATCTTTCAATGTGATTACTGCAAGAAAATCTTCGACACGCTCCGAAAGAAGAAGTCTCACGAGAAATCCGTCCACATACATTGTAATATGTTGAACAAGTGTGGTTATTGTAACCAGAAGTTTAAAGATTACAAGCAGAAAGATATTCACATGGCGAAGGTTCATGGAGTTCCGATGTTGTCGCTAAAATGTCAGGCTTGCGAGAAAACGTTTACGAATAAGACGGCATTGACTATTCATACGAAGAGAGATCATTTGATGGAAAGGAGACACAAGTGTTCGGAATGTGATATGAAGTTTTTTAAGACGAGTGAACTCACGGAACATATGGTTAAGCATACGGGAATGAGGAGTTTTCAGTGTAGTGTGTGTTTGAAGTCTTATGGAAGGAAAAAGACGTTAACAGAGCATATGAGGATTCATGCAGATGATAGAAGGTTTAAGTGCGAGCATTGTGGGCAGGCGTTTGTGCAGAAGTGCAGTTGGAAAGGGCATGTTAGGGCGAAGCACGGAGATATGGTGTAG
- Protein Sequence
- MGSTDIGIVDTTVKRVLKITKTGKAKVKQNDWTVTIKKKKSVSKEGTKKSIADVKEMDKHRQNLIQILLNTNATPIRNFDGLGYTCSFCLNSSFPDIRELKKHTLDQHDDSDKRNFMLNYPLAAYVVKLDVTSLKCVICGKEILTIEEMVKHLMMEHDRTLHTDIKNRMLPFNFVDDVFECVLCQKKIEHLKVMQEHLNVHYGSFFCEECSAPFMTERRLKCHVKRHQKGEFPCSICSKIFDTILRRDDHTKAVHGGANKRNKCPICSEKFYSHYKKQEHMAREHGMEKTSYKCMACDKSFACNSRLNKHRRRDHLMERCHECQQCDKKFFALKGLQQHMLTHTGIKEFQCDVCLKSYQRKSTLREHMRIHEDDRRFKCVRLKRTVKTEGLRPRGYFPEDTKQISELEKHRANIRLLLQCSNATPIRCRGGIGYACCFCRDQYPKAADLKTHTIQQHDDKTKLRFMKGKMMYAFLVRLDITGLQCKICSESMNTLEDIMTHLLNVHEKHVYTDIKNHVLPFKFDDKAPALTCAMCPNTFNRFKALLEHMNTHYRNYVCDFCDAGFVTRNNLVNHMEAHKTGIFQCDYCKKIFDTLRKKKSHEKSVHIHCNMLNKCGYCNQKFKDYKQKDIHMAKVHGVPMLSLKCQACEKTFTNKTALTIHTKRDHLMERRHKCSECDMKFFKTSELTEHMVKHTGMRSFQCSVCLKSYGRKKTLTEHMRIHADDRRFKCEHCGQAFVQKCSWKGHVRAKHGDMV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -