Nnoc013295.1
Basic Information
- Insect
- Nomophila noctuella
- Gene Symbol
- -
- Assembly
- GCA_958496325.1
- Location
- OY292495.1:8709879-8727442[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00086 0.069 14.2 1.1 1 23 294 316 294 316 0.99 2 12 3.5e-05 0.0029 18.6 1.6 2 23 324 345 323 345 0.93 3 12 0.024 1.9 9.7 0.8 1 23 349 371 349 371 0.97 4 12 0.0004 0.032 15.3 0.9 1 23 376 399 376 399 0.98 5 12 0.001 0.081 14.0 0.2 1 23 403 426 403 426 0.94 6 12 0.011 0.87 10.8 0.2 3 22 443 462 442 466 0.92 7 12 0.00059 0.047 14.7 0.7 3 23 476 497 476 497 0.98 8 12 0.39 31 5.9 0.6 3 23 518 539 517 539 0.96 9 12 4e-05 0.0032 18.4 0.3 1 23 550 572 550 572 0.98 10 12 1.1e-05 0.00085 20.2 1.5 1 23 578 600 578 600 0.99 11 12 1.4e-05 0.0011 19.9 0.3 1 23 606 628 606 628 0.98 12 12 4.7e-05 0.0038 18.2 0.2 1 23 634 657 634 657 0.98
Sequence Information
- Coding Sequence
- atGGATCAAGTGAGAGCTTGTAGGATATGCCTTATAACTGGTGTGAAGATGTACGATTTGAGAAGTTACCCATTGGCGAACTATTTCGAATCTGTTGCTGGCTTGAGCGACCCTGCTATATTGGATCTCCCACCATATGCCTGCTACGAATGTAGTGCTTATATCAGGAACACTTTCCTATTTCACGAGAAGTGCCTGAGGGGTCAATCTGCTCTCTACAATATTTTGCGATCAAAGGGAAAGATCACAGAAACCAGTGTTCAGAGCGTAGACAGACTGCAGttaaacttgatttcaaatattaaatGCAACGTAATCCCCAACAGCGTCATAAATATAACTCATGAATATCCAGACCTAAGTGATATAAAAGAGGAACCACAGAATGATGTTATATCTCATGAACAGAGTGAAGATGTTGAGATTGACTTTTTTAAAGAAGAAATGGAATATACTAACTTATACTCACCAAGCCACTCACTTAGCGACGATGAAGACGAGCCTTTATCTTTTCATAAGAGCAAGAATAAAGCCATTGAAACCACAGTAAATAAGGGAAAGAGAAAAAGGAAAGTACAAAATGAGAgtaagattgaaattgaaattgaagcGATGAGTGAGGAGAATGTTGGCACCTCGCAGCAGAAAGATTCGCCAGAGACCACAGTAAAGAGAAAGCGTGGTAGACCGAAAAAGAACAAAGGTGGTCCAGCAAAAAAAGAGCGTCCTGCTGTGACGCGGCGAACGGAGAATACCGGTGGCGTCGATAACAATGACATTGATTTGGAGGAATACGTCACTATTATTAAACTTACGAAAGAAGAACAGATGGAAGAAGTCACAAAGCGGCAGACGTCGTCAAATTACCAAAACGCATTGTACAAGTGCAATCTCTGTTTTAAGGGGTTCATTGATACAGATGCTTGGGAGCATCATGTCAACAAACATAAGCCGACGCCGGGTGATTTAGAATGTCCCATCTGTAAATTCCGGTTCAAGACGAAGAGGAATCTTCAAAAGCACAGCGCAAATCACGAGAAGAAGTACGCCTGCAAGTCTTGCCCCTACGTATCGAAAACAACgaCCCAAGCGAAACAGCACCAGAGATGGCATAAAGGGGTCACGTACAAGTGTCAGTATTGTGATGAAGTTTCTACAAAATGGACTTCGTACTTAAGCCACGTGCGAATCAAGCATCCCTCAGAGTTCATATGTGGCGTGTGCGGTTACTCTTTCGTGAGCAAACTCGGGCTTAACATGCACAAGACAATGATGCACAAAGCAGTCGCAgaaaaagaagaagaaaaagaagaggAAGGCCCATACTGCGCGGATTGTGACGTCAAGTTTGTATCGATGGAGGCGTACCGACGGCATATGTTTACCTCGGCGAAGCACACGAATAACGAAGACTATAAAAACGGGTGTCGCGTTTGCGGTGAGTCCTTCGCAAATGGTGAGGAACTTCGGGTCCACCACAGACGGATGCACGCGCGGCAGCGGCCGAAGAACTACGGCAAGAGGCCCGCCAACACGACCTGGCCAGCGAACTGCGAGCATtGTTCGGAAGAAATTGCGAACGCAAGGGAGTACTGGACGCATTTTAGACGAGTTCACCCCGACAAGAAATACCCTATCCAGAAGGACTATATCTGTGATATTTGTGGCAAAGGCTTCCGGGGTAACGCATTCCTGGTATACCATAAGCGGACGCACACAGAAGAACGGACTTTCAAGTGCGGCCAGTGCCCCAAGGCGTTCTTCAACCGCACGAACCTGCAAATGCATGAGAAGACGCACTCCGACCACCGCCCGTACCCCTGCACTATGTGCTTCAAGGCGTTCAAGGGAAAAGGAGCTCTGGATAGACACATTAGGAGTCACACAGGCGTGAAACCGTACGAGTGCGAAGTGTGCGGCAAAGCGTTCGGTCAGTCCAACAGTCGCAAGCTGCACGTGCGGACGGTGCACCTGAAGCAGCCCGCGCCGTACATCAGCAAGGCGAGGCTCGAACGCACGCGCGCCAAGATTGCGACGACTAAggacccgccgccgccgacgcagCAATTTGCGTACTAG
- Protein Sequence
- MDQVRACRICLITGVKMYDLRSYPLANYFESVAGLSDPAILDLPPYACYECSAYIRNTFLFHEKCLRGQSALYNILRSKGKITETSVQSVDRLQLNLISNIKCNVIPNSVINITHEYPDLSDIKEEPQNDVISHEQSEDVEIDFFKEEMEYTNLYSPSHSLSDDEDEPLSFHKSKNKAIETTVNKGKRKRKVQNESKIEIEIEAMSEENVGTSQQKDSPETTVKRKRGRPKKNKGGPAKKERPAVTRRTENTGGVDNNDIDLEEYVTIIKLTKEEQMEEVTKRQTSSNYQNALYKCNLCFKGFIDTDAWEHHVNKHKPTPGDLECPICKFRFKTKRNLQKHSANHEKKYACKSCPYVSKTTTQAKQHQRWHKGVTYKCQYCDEVSTKWTSYLSHVRIKHPSEFICGVCGYSFVSKLGLNMHKTMMHKAVAEKEEEKEEEGPYCADCDVKFVSMEAYRRHMFTSAKHTNNEDYKNGCRVCGESFANGEELRVHHRRMHARQRPKNYGKRPANTTWPANCEHCSEEIANAREYWTHFRRVHPDKKYPIQKDYICDICGKGFRGNAFLVYHKRTHTEERTFKCGQCPKAFFNRTNLQMHEKTHSDHRPYPCTMCFKAFKGKGALDRHIRSHTGVKPYECEVCGKAFGQSNSRKLHVRTVHLKQPAPYISKARLERTRAKIATTKDPPPPTQQFAY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -