Nnoc021683.1
Basic Information
- Insect
- Nomophila noctuella
- Gene Symbol
- -
- Assembly
- GCA_958496325.1
- Location
- OY292507.1:1967200-1970391[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.00033 0.026 15.6 3.2 1 23 159 182 159 182 0.97 2 17 4.7e-05 0.0038 18.2 2.4 1 23 191 214 191 214 0.97 3 17 0.013 1 10.5 0.4 2 23 227 249 227 249 0.97 4 17 0.019 1.5 10.0 0.4 1 23 258 281 258 281 0.96 5 17 7.9e-06 0.00064 20.6 2.1 1 23 292 315 292 315 0.97 6 17 4.6e-05 0.0037 18.2 0.3 2 23 345 367 344 367 0.96 7 17 0.0013 0.11 13.6 1.2 2 23 377 399 376 399 0.96 8 17 0.023 1.9 9.7 0.7 2 19 404 421 403 424 0.93 9 17 0.0014 0.11 13.6 0.4 2 21 429 448 428 451 0.94 10 17 0.16 13 7.1 1.3 3 23 461 482 460 482 0.94 11 17 0.00068 0.055 14.5 3.8 1 23 487 510 487 510 0.93 12 17 0.0012 0.094 13.8 1.9 2 23 522 544 521 544 0.95 13 17 0.00033 0.027 15.5 0.7 1 23 568 591 568 591 0.92 14 17 0.05 4 8.7 0.1 2 23 598 619 597 619 0.95 15 17 0.012 0.97 10.6 0.6 2 23 626 647 625 647 0.97 16 17 0.006 0.48 11.6 0.2 1 23 713 735 713 735 0.97 17 17 0.4 32 5.8 2.4 1 23 741 764 741 764 0.96
Sequence Information
- Coding Sequence
- ATGGTTTCAATCAAAGAAGAAATAAACATCAAATTGGAACTCGAGGTGCcagatttgaaaattaaaacggAGCCTGAAACAAAATCTGACAGGAAAGACCCAACCTCTTTTTTGCCTGAAGAATTAATGTCGTACGAGATaaaagagaaaaagaagaagaaaaaaaagaaaaagaaagagcAAGAAGATCCTTTCAAAGATATTGAATTTGGGAATAAAGAAGTCAGCAATGAACCATCGCTTGAACTAAAGATGGAACCGGAAGTAACAATCAAGGTTGAGAATATAGAAGTGGAATTGGATTTTAATGATTTCGAGAACAACGGCGCCATGATGCTAGAAGGTCCTCACATGGAAAATAGCCAGCCGGTAGTCAAACTAGAAGAAGATAACCGAGAAGCAGTACTCCTGACCTTTGAGAGCGTTATCAACGAACACTCCATACTAGGCTACGCGGAAGAACCAGCACCGACTTACATGTGCAAGGTTTGCCACTTAGTCTTTCAATCCCCTAAGACTCTACAGATGCATCAGAAGAGAAAACACAAAGTGTTCAGACGCTCCTTCAAACATGTCTGCGATCATTGCGGAATGTCGTACGAAATGAAGAACAGCCTGATAGCTCATATGAGACGAAAGCATGGTCCAGACGCCAATCTTGATGACAAAGAAGAGAGAACTTGCGAGATTTGCGCTCTAGTGTTCAAAGGAATGGGGAGATTACGAATGCATATGAGAAGGAAGCATGGGTCCTTTCAAGACTCATTCAAATATGCCTGCGCGCAATGCGGGCTGACTTACGAAAAATACAGGAGTTTGGTCGTCCATGAGAAAAGAAAACACACTCGCCAAAAACCTATTCCCAACCAATGGTTTAATTGTCCGTTCTGCCCGAAAATATTTACGAGACGAGAGACTTACACCCGTCATATTCAAAGGAAGCATAAAGTTTCCGAAGAAGATGCTTTGAAAGAAGCAGAAACGATGCCAGATTACGTAGACTCAAGCCGGAATGAAAGCACAGGCGAAATACCGTGTAAAGAATGTCCTTTAGTGTTCAGTTCGATCAATTACCTAAAGCTTCACATGAGGAGAAAGCATAACGCTTTAAAGGAAGATTTTAGGCTTAAATGTAGGATTTGTAACTTGTCCTACGATAAAATTGAGAGCCTAAAACGCCATGTGAGACGGAAACACGACAAAGGATCATATTGCGAAGTTTGCAACAAACAATTTGACACCAGGGAGTCTTATTTGAACCATTCTCACGTGAAATCTATAAAGGAATGCTATATTTGCGGACTTATTTTCGCTTCCCAAGGTGGTTTGGCGAAGCATATTCGATGTACGCATAAAATTGACACGCCAAAAGTAGCGTTTTGTAACATTTGCAACGAAGGTTTTCATGATAGGAGAATGTTGAAACCGCATTACCTAAAAGTGCATATGAAAGCGTCATACACTTGTGCTTACTGCCATAAAGTTTTTAAAGCGAAAGAAAGTTATAGGAGGCACGTTTTGTTCAAACATTCGTCGAATAACCCATTGAATATTCAGATGCAGAAATGCGATAAATGCTCTGAAACGTTTAAAGGCGAATTTGAACTTTGTCGTCATATAAATTTGGTCCACGGGGCGAACGGTGATGATAATCTGAATTTATTGGACGTGAAAAAGGAAGAAGTCGatataaaaaacagttttcagTGCACGAAATGTCCCGAAACTTATGAAACTTGGGAATCTTTAAAGCTTCACTTTGAACAGAACCATCATGTATCGACTGAAACTCAGTGCCAAATATGTGGTGAGATTTTACCTGGATCTGAACTTCAGAAACATATTAAAACAACCCATACTGCTAACGTACCAGTCAAATGCAAATTCTGTGAGTTCGAAACGGCTAATAAAGCTAGTTTGACTCAACATGTTTTAAGGCATAAGAATGCTACGTCTTTACATTGCGAATTCCCAGGTTGTAGATATAAGAGTTACTACGACGGTGCAATGTTAAAACATAGGAAAAAACATATGGAGCAAGGCGTCAAATTACAATGTACCAAATGCCCCTTTCAAACTATGAATAAGTATATTCTTAGATATCACGAAGAGGCCCATTTGACTGGTAAGAAGAGGTACAAATGCGACCAATGTGATTACGCTACGATACTGCCAGCTAACTTAGTCCAACATAAGTATAAGCATTCGGCAGAAAAGAGGTTTAAATGCGAGGTATGCCCGTTCGAGACTAAGTATAATACGTCTTTACGCTTTCACGTTAAGAAGAAACACTGTGATCTACCGAGTTTCACTTGA
- Protein Sequence
- MVSIKEEINIKLELEVPDLKIKTEPETKSDRKDPTSFLPEELMSYEIKEKKKKKKKKKKEQEDPFKDIEFGNKEVSNEPSLELKMEPEVTIKVENIEVELDFNDFENNGAMMLEGPHMENSQPVVKLEEDNREAVLLTFESVINEHSILGYAEEPAPTYMCKVCHLVFQSPKTLQMHQKRKHKVFRRSFKHVCDHCGMSYEMKNSLIAHMRRKHGPDANLDDKEERTCEICALVFKGMGRLRMHMRRKHGSFQDSFKYACAQCGLTYEKYRSLVVHEKRKHTRQKPIPNQWFNCPFCPKIFTRRETYTRHIQRKHKVSEEDALKEAETMPDYVDSSRNESTGEIPCKECPLVFSSINYLKLHMRRKHNALKEDFRLKCRICNLSYDKIESLKRHVRRKHDKGSYCEVCNKQFDTRESYLNHSHVKSIKECYICGLIFASQGGLAKHIRCTHKIDTPKVAFCNICNEGFHDRRMLKPHYLKVHMKASYTCAYCHKVFKAKESYRRHVLFKHSSNNPLNIQMQKCDKCSETFKGEFELCRHINLVHGANGDDNLNLLDVKKEEVDIKNSFQCTKCPETYETWESLKLHFEQNHHVSTETQCQICGEILPGSELQKHIKTTHTANVPVKCKFCEFETANKASLTQHVLRHKNATSLHCEFPGCRYKSYYDGAMLKHRKKHMEQGVKLQCTKCPFQTMNKYILRYHEEAHLTGKKRYKCDQCDYATILPANLVQHKYKHSAEKRFKCEVCPFETKYNTSLRFHVKKKHCDLPSFT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00961192;
- 90% Identity
- -
- 80% Identity
- -