Nnoc001806.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Nomophila noctuella
Gene Symbol
L
Assembly
GCA_958496325.1
Location
OY292482.1:9960131-9982831[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 1.5e-06 0.00012 22.9 1.7 1 23 86 108 86 108 0.99
2 17 1.5 1.2e+02 4.0 4.8 1 23 114 136 114 136 0.97
3 17 6.6e-07 5.3e-05 24.0 2.7 1 23 142 164 142 164 0.99
4 17 3.2e-05 0.0026 18.7 0.1 1 23 170 192 170 192 0.98
5 17 0.00069 0.056 14.5 0.0 2 23 208 230 207 230 0.95
6 17 6.3 5e+02 2.1 0.1 9 23 261 276 257 276 0.93
7 17 0.8 65 4.9 0.1 3 23 329 349 328 349 0.97
8 17 0.68 55 5.1 0.0 3 20 364 381 363 382 0.86
9 17 0.00031 0.025 15.6 0.6 1 23 392 415 392 415 0.94
10 17 0.034 2.7 9.2 0.1 1 23 420 443 420 443 0.92
11 17 0.027 2.2 9.5 0.5 1 23 495 519 495 520 0.94
12 17 0.00092 0.074 14.1 0.0 2 23 588 609 587 609 0.96
13 17 0.061 4.9 8.4 0.0 1 23 617 639 617 639 0.97
14 17 1.1 91 4.4 0.4 2 23 647 668 646 669 0.93
15 17 0.91 73 4.7 0.3 1 23 743 765 743 765 0.94
16 17 0.0036 0.29 12.3 0.1 1 20 773 792 773 795 0.95
17 17 0.14 11 7.3 0.4 1 23 802 824 802 824 0.94

Sequence Information

Coding Sequence
ATGATCATGCTATTCAAGGGTAACAGCAGCAGACTGGAACACCTCATCGAGAAGATACAGGCAAATAAAGAAAACCACGACGTTATCTCGGAAGATATAAAGGAAGCACTCGGCAGCGTGGGTAGCGCCGGCAGCACGGCGGACAGCTCGTGGCCGTCGTCGACGCCGGAGCCGTCGCCGTCGCCCGCGTCCGCCGACGCCGCCGACGGCGACGCCGAACCGCCctacacgttgggcgccaccgAGCACACGCCCTACCAGTGCCAGTTCTGCGACAAGGCATTCCCAAGGCTGTCTTATCTCAAGAAACATGAGCAGACGCACTCGGACCAGATGCCGTTCCGCTGCGAGTTCTGCGCTCGGCTGTTCAAGCACAAGCGATCGCGCGACCGGCACGTCAAGCTGCACACCGGAGATCGGAAGTACCGCTGCGCTCACTGCCCGGCTGCCTTCTCCAGGAGCGACCATCTGAAGATCCATATGAAGACGCACGACAACCAGAAGCCGTTCCAGTGCAGCGTGTGCAACCGCGGGTACAACACGGCGGCGGCTCTGACGTCACACATGCAGGGGCACAAGAGAGATCGGGAAGGACGCGAGCCGGACCGGCGCCGCGCGCTTCGGTGCCTCCGCTGCGGCGACGCTTTCAGGAGGCCGGACTTATTGCAAGCTCACATGGCTAGTGCTCATGGAGTTGAATCATCGGCTATGACTCCACCACGTCGGGTCGCATCGCAACCACCGCCCACGCTGCTGGCGTGCATATACTGCACCCGCGACACATTCACCAGCATGGAGCAACTGCAGCTGCACGTGCGCGCCGCCCACTCGGCGCTGCTGAACGGGGAAACTCCGGTGCCGGGCATCGACCAGCCCGCTCCCACCGACCTCAGCAGACGAGCCCCAGACGATGCTCCACCTATCAAGCGGCCGCGATCGGGCTCCGCCACGCCGCAGACGGCGCTGTCACCCAGCACCCTCCTCTGCAATCAATGCGACGCGGCGCTCCCCGACTTCGAGGCTTTCCGAACCCACGTGAAGGGGCATCTGGAGGAGGGCGGCGAACTCGGCCGCTCGAGTCCGGCTCCCTGCCTCCACTGCGGGGCGACGTTCGCGGACGCCGCCGCGTCCGAGAGACACCTCGCCGCGTACTACCTGGCGGTTTCGTGCGAGTACACGTGTCACAGCTGCGCTCGGAGCTTCTCGGCTCCGGATGACCTCCAAAAACATCTCCTGGACTTGCACGCCCATCTCTTGTACCGATGCTCACTCTGCAAAGAAATCTTCGATTCCAAAGTCGCAATTCAGGTGCACTTCGCAGTGGCGCACAGCGGCGAGAGCAAGGTGTGGGTGTGCCGgtcgtgcggcgcgggcgggggcgcGCTGCGCTCGGCGGCGGAGGGCGCGGCGCACGTGCGCGCGCGGCACGCGGCGGCGCGCTGCGCGTGCGGCGCCGTGCTcaccgccgcccgcgccgcgcgctaCCGCTGCCCCGCGCCCGCCTGCCCCGACACCTTCGCCGTGCAGTACCTGCTCGAGCGGCACGTGCACACGCACCACCAGCACCAGCATCTGgGTCTAAACGGCGACATGGCTCGACAAGTGAAGCGCCCGGAGAACAACAACGGTTCCGAGGGCGCGGACGGCGCGTGCTCGCCGTGCACCACGCtggaggcgggcgcgggcgcgggcgtcgGCGCGGGCGtcggcgcggggggcgcgggcgagGAGCGGCGCCGCAAGAACGGCGTGGTGGCGCTGCAGTGCGCGTACTGCGGCGAGCGCGCGCGCTCCCGCGCCGACCTGGAGGCGCACACGCGCGCGCActccggcgccgccgccgcgcgacaCAAGTGCCTCATCTGCGACGAGGTGCTGCCCTCCGCCGCCGTGCTGGCCGAGCACAAGCTCACCCATTGCAAGGTGATAGCCGGGGACACTTGCGCTCGGTGCCGAGCGCGTCTGCCGTCCGAGGAATCTTTCCTAGCCCATATGGCGCGGCATCACCCGACGCTGCCCGCACCGTGCGTCGTTTGTCGACAAACTCTCGCGTCGGAGGCGGAGGCCCGCCTCCACGCGCGATTCCACCTACGTCCGGCTGAGGACGAGCAGAGATGCGCGATATGCCTCCGAGCGCTGACCGAGGCGGAGACCGGCGAGGGCGCCCGCGCGTGCTCGTCCTGCTacgcgcgccacgccgccccGCGGCCCCCGCCCCCCGCCGACCACGACTGCCGCCTCTGTCGCCGCGCCCTCGGCTCCCCCACGCGACTCCAGGCGCATCTAATCGAGCACACGTTCGCCGGAATCAGCGCGTTCACGTGCTACCTATGCTCGGCCGTGTTCACGAGCGCGGCGGGCCTGCAGCGTCATCTCCCCGAGCACGCGTCCGCGCCGAAGCCGTTCGACTGCGGGCGATGCGGCCTCAAGTTCTTCTTCCGCGCGGAGCTGGACAACCACGCGTTCGTGCACCTCGAGGAGGCGGAGATAGCTCAGCGGGCGTTCTACGAGGCGTACGCGCGGGGAGCGGCGTCGGCGTGGGCCGCCCTGGCGCCGCCGGAGAGCGccccgccggcgccggccgcgacgcccgccgcgcccgcggtCGACGTCAAGCGCGAGCCGGAGATCAAGGAGGAGCGCAACACCGACGAGTACATCGAGGTgtcgtcgccgccgcccgcgccccccgcgccccccgccgccGCGTCGCCCGCGCTCGTCGTCAAGCAGGAGAAGCCCGACGAAGACTGA
Protein Sequence
MIMLFKGNSSRLEHLIEKIQANKENHDVISEDIKEALGSVGSAGSTADSSWPSSTPEPSPSPASADAADGDAEPPYTLGATEHTPYQCQFCDKAFPRLSYLKKHEQTHSDQMPFRCEFCARLFKHKRSRDRHVKLHTGDRKYRCAHCPAAFSRSDHLKIHMKTHDNQKPFQCSVCNRGYNTAAALTSHMQGHKRDREGREPDRRRALRCLRCGDAFRRPDLLQAHMASAHGVESSAMTPPRRVASQPPPTLLACIYCTRDTFTSMEQLQLHVRAAHSALLNGETPVPGIDQPAPTDLSRRAPDDAPPIKRPRSGSATPQTALSPSTLLCNQCDAALPDFEAFRTHVKGHLEEGGELGRSSPAPCLHCGATFADAAASERHLAAYYLAVSCEYTCHSCARSFSAPDDLQKHLLDLHAHLLYRCSLCKEIFDSKVAIQVHFAVAHSGESKVWVCRSCGAGGGALRSAAEGAAHVRARHAAARCACGAVLTAARAARYRCPAPACPDTFAVQYLLERHVHTHHQHQHLGLNGDMARQVKRPENNNGSEGADGACSPCTTLEAGAGAGVGAGVGAGGAGEERRRKNGVVALQCAYCGERARSRADLEAHTRAHSGAAAARHKCLICDEVLPSAAVLAEHKLTHCKVIAGDTCARCRARLPSEESFLAHMARHHPTLPAPCVVCRQTLASEAEARLHARFHLRPAEDEQRCAICLRALTEAETGEGARACSSCYARHAAPRPPPPADHDCRLCRRALGSPTRLQAHLIEHTFAGISAFTCYLCSAVFTSAAGLQRHLPEHASAPKPFDCGRCGLKFFFRAELDNHAFVHLEEAEIAQRAFYEAYARGAASAWAALAPPESAPPAPAATPAAPAVDVKREPEIKEERNTDEYIEVSSPPPAPPAPPAAASPALVVKQEKPDED

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01437318;
90% Identity
iTF_00365139;
80% Identity
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