Nnoc008004.1
Basic Information
- Insect
- Nomophila noctuella
- Gene Symbol
- ZNF131
- Assembly
- GCA_958496325.1
- Location
- OY292489.1:3189605-3201709[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.65 52 5.2 0.3 3 17 193 204 191 210 0.69 2 18 0.041 3.3 9.0 2.8 1 23 219 242 219 242 0.95 3 18 0.95 76 4.7 0.1 2 21 248 264 247 267 0.71 4 18 0.0002 0.016 16.3 0.1 1 23 274 296 274 296 0.94 5 18 0.0011 0.086 13.9 0.6 1 23 302 325 302 325 0.97 6 18 0.00043 0.035 15.2 7.5 1 23 331 353 331 353 0.97 7 18 0.00081 0.066 14.3 1.7 1 21 359 379 359 382 0.86 8 18 5.4e-05 0.0043 18.0 0.4 1 23 388 410 388 410 0.96 9 18 0.0023 0.19 12.9 3.8 1 23 416 439 416 439 0.94 10 18 0.028 2.3 9.5 0.5 3 13 630 640 628 647 0.77 11 18 0.064 5.1 8.3 6.0 1 23 656 679 656 679 0.95 12 18 3.4 2.8e+02 2.9 0.1 3 11 686 694 685 704 0.78 13 18 3.7e-05 0.003 18.5 0.4 1 23 711 733 711 733 0.95 14 18 0.0048 0.39 11.9 1.6 1 23 752 775 752 775 0.95 15 18 0.00022 0.018 16.1 1.3 1 23 781 803 781 803 0.96 16 18 7.3e-05 0.0059 17.6 2.6 1 23 809 832 809 832 0.95 17 18 6.2e-07 5e-05 24.1 0.4 1 23 839 861 839 861 0.97 18 18 0.0016 0.13 13.4 1.2 1 23 867 890 867 890 0.93
Sequence Information
- Coding Sequence
- ATGGAACTGGTGTCTATCTGTAGAACTTGCCTCGCGAGAGaaactcataaaaatatatcgGATCTCAAGACGCAGCCTGGAGACAATTGCTCGGATATTCTTctcttttgtttaaatataaagGTGGAAGATGACTCCAAAATTAGTACAAATCTGTGTCTAAAGTGTTTCAAAAAAGTTATGGCCTTCTATAAGTTCAAACTTCTGGCATTGAAAAATGATGCATACTTAAAAACTGTAGAATCGGAAGATTCTGTTAAGAATGAAATATATCTCCAAGATGATGATATTAAGATTGAAAATAACCTTAATGATCATCAAGAATCATCATGTGGAAGCGACATTGGCGACAGCCTTCTCAGCATAAAGATAGAGCCACAAGCTAAAGAAGACGAGGCGGATGGCCAGTCTGACAATGAGTTGTTAAgtgtaataaagaaaattaaatatgagtTTGTAGCTGATCCAATAGAGGAAACCAAAGAGAATTCACCAGCCAAGAAACCAAAACGTAAAAGAGGTAGACCTCCTAATCCAGAAGGAAGGAGAAAGAAACCAGCAGCAATATCACAAATATGTGAAGAATGCGGCAAGACTGTCAAGAACTTGAAGGAGCACTCATTGCAGCATTTGCCAGCTGCTACACGCAAAATGTACTCGTGCAAATCGTGTGACAAGAAGTTTGCATCGTATGGGGCACGGTCCAAGCATAACAAACGAAAACATTTAGGCCTTAAAAAGACTTGTCCtatttgtaataaaaTGGTGTCGGACGTGTGGGCGCACCGGCGGGTGTCGCACGAGCCGGCGTCGCTGCGGCACGCGTGCGCGTCGTGCGGGCGCCGCTTCATCAGCCCGTCGGCGCTGCGCGCGCACGCCTCCATGCACACGCGCGCCATGCCCTACGCCTGCGATGCCTGCGGCAAGCGCTTCCGCGTCAAGTTGCTCATGCAGCAGCACAGGAGGCGAGTTCACGAGAATGAGAAATCCCATATGTGTCAATTTTGCTCGAAGAGCTTTTTCAAGAAATATCATCTTCAAGTTCATATAAGGAGCCACACCAAGGAGAAGCCGTACAAATGTCCAGAGTGCAACAAGTGTTTCTCGACGACCACCATCCTGAACAACCACAGCCTCGCCGTGCACTCCGGCGTCAAGCGGCACGCCTGCACGCTCTGCAGCATGACCTTCGCGAGACCAGGATACCTGCGCGTGCACATGATAAGCCACACCAAAGAGAAGAAGCACCCGTGCAAGTACTGCGGCATCCGCTTCGGCCGCTCCGACCATCGCAAGCGGCATGAGTTCACCGCCCACGAGCGACACCTCATTACCAACCTTGATCCTAAGGACTTAGGGTCTACAATCGAAGCACAGGTGAAGAGGACCAGACTTCCAAAGGAGACGGCGATAGTTGAACCTAGCCACGACGTTACTTCAGTGGAAGATGACTCCAAAATTAGTACAAAGCTGTGTCTAAAGTGTTTCCAAAAAGTTATGGCCTTCTACAAGTTCAAGCTAATGGCATTGAAAAATGACGCATTCTTAAAAACTGCAGATTCAGAAGGTTGTATCAAGATTGATGTATATCTCCaagatgataatattaaaattgaaaatcatGACCATCATGAGTCATCGTGCGGAAGCGACATTGGCGACAGTCTCGATATAAAGTTAGAGCCACAAGCTAAAGTAGACGAGGCCGAGGCTGACAGCCAGTCTGACAATGAGTTGTTAAgtgtaataaatcaaattaaatatgagTTTGTAGCTGAAGATCCGATAGACGAAACCAAAGAGAATGACAAAAAACCAAAACGAAAAAGAGGTAGACTTCCTAATCCAGTAGCAAAGAGAAAGAAACCAGCAGCGATATCACAAATATGTGAAGAGTGCGGCAAGACTTTCAAGAACTTGAAGGAGCACTCATTGCAGCATTTGCCAGCTGAGACACGCAAAATGTACTCATGCAAGTTATGTGACAAGAAGTTTACATCGTGTGGGGCACGTTACAAGCATAACAAACGAAAACATTTGGGCCTTAAAAAGGCTTGTCCTAtatgtaataaaaTGGTGAGGGACGTGTGGGCGCACCGGCGGGTTCAGCACGAGGCGGCGTCGCTGCGGCATGCGTGCGCGACGTGCGGGCGGCGCTTCATCAGCCCGTCGGCGCTGCGCAAGCACGCCTCCATGCACACGCGCGCCTCCATGCCCACGCGCGCCCAGCCACGCCCTAAGCCTGCCATGCCCCACGCCTGCGACGCCTGCGGCAAGCGCTTCCGCCTCATACAGAACATGCAGCAGCACAGgagGCGAGTTCACGAGAGAGAGAAAACCTTTCTGTGTCAATATTGCTCGAAGAGTTTTTTCGCTAAAAAAGGCCTTCAAATTCATATAAGGAGCCACACAAAGGAAAAGCCGTACAAATGCCCGGAGTGCCCCAAGTGTTTTACGACGACCTGCGTCCTGAACAACCACATCCTCGCCCTGCACTCCGGCGACGTCAAGCTGTACGCCTGCAAGCTCTGCAGCAAGACCTTCGCGAGACCCGGATACCTGCAACGGCACATGATCAGCCACTCCAAAGAGAAGCCGTACCCGTGCAAGTACTGCGGCTTCCGCTTCGGCCGCGCCGACAATCGCAAGACGCACGAGTTCAAAGCCCACGAGCAACACCTCAACATCTGA
- Protein Sequence
- MELVSICRTCLARETHKNISDLKTQPGDNCSDILLFCLNIKVEDDSKISTNLCLKCFKKVMAFYKFKLLALKNDAYLKTVESEDSVKNEIYLQDDDIKIENNLNDHQESSCGSDIGDSLLSIKIEPQAKEDEADGQSDNELLSVIKKIKYEFVADPIEETKENSPAKKPKRKRGRPPNPEGRRKKPAAISQICEECGKTVKNLKEHSLQHLPAATRKMYSCKSCDKKFASYGARSKHNKRKHLGLKKTCPICNKMVSDVWAHRRVSHEPASLRHACASCGRRFISPSALRAHASMHTRAMPYACDACGKRFRVKLLMQQHRRRVHENEKSHMCQFCSKSFFKKYHLQVHIRSHTKEKPYKCPECNKCFSTTTILNNHSLAVHSGVKRHACTLCSMTFARPGYLRVHMISHTKEKKHPCKYCGIRFGRSDHRKRHEFTAHERHLITNLDPKDLGSTIEAQVKRTRLPKETAIVEPSHDVTSVEDDSKISTKLCLKCFQKVMAFYKFKLMALKNDAFLKTADSEGCIKIDVYLQDDNIKIENHDHHESSCGSDIGDSLDIKLEPQAKVDEAEADSQSDNELLSVINQIKYEFVAEDPIDETKENDKKPKRKRGRLPNPVAKRKKPAAISQICEECGKTFKNLKEHSLQHLPAETRKMYSCKLCDKKFTSCGARYKHNKRKHLGLKKACPICNKMVRDVWAHRRVQHEAASLRHACATCGRRFISPSALRKHASMHTRASMPTRAQPRPKPAMPHACDACGKRFRLIQNMQQHRRRVHEREKTFLCQYCSKSFFAKKGLQIHIRSHTKEKPYKCPECPKCFTTTCVLNNHILALHSGDVKLYACKLCSKTFARPGYLQRHMISHSKEKPYPCKYCGFRFGRADNRKTHEFKAHEQHLNI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -