Nnoc023407.1
Basic Information
- Insect
- Nomophila noctuella
- Gene Symbol
- -
- Assembly
- GCA_958496325.1
- Location
- OY292510.1:570722-579066[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0019 0.15 13.1 2.7 2 23 28 50 27 50 0.94 2 12 0.00068 0.054 14.6 5.3 3 21 59 77 58 80 0.89 3 12 9e-06 0.00073 20.5 1.3 2 23 88 110 87 110 0.95 4 12 2.6e-05 0.0021 19.0 0.4 2 23 117 139 116 139 0.94 5 12 0.00052 0.042 14.9 0.3 1 23 146 169 146 169 0.97 6 12 2.5e-05 0.002 19.1 0.6 3 23 176 197 175 197 0.94 7 12 0.00056 0.045 14.8 1.0 2 23 213 235 212 235 0.94 8 12 0.00015 0.012 16.6 0.2 2 23 243 265 242 265 0.95 9 12 2.9e-06 0.00023 22.0 1.0 2 23 271 293 271 293 0.97 10 12 0.81 65 4.9 5.8 2 19 301 318 300 323 0.90 11 12 5.6e-07 4.5e-05 24.3 2.1 1 23 329 351 329 351 0.98 12 12 0.00018 0.014 16.4 0.3 1 23 356 379 356 379 0.97
Sequence Information
- Coding Sequence
- ATGCTCATTCCGGTGAAATTCGTTGAGTCTtcacgcaagacgCATCTGAAGTTTGTGCATTCGACTGAAGACGATGTCGTGGAGTGCGACCAGTGCTTCCGCACGTTCAAGACCGTTCAGCATTTGAGGTCTCATaagAGCTCAGTCCACAATGAAGGCAGTACCGAGGAGCCCTGCGAGCACTGTGACAAGACGTTCCCCAACAAGAAGAAGCTGAACAACCACGTTTTTTTCTGCCACCCCAGTCCGGAGGAGAATGTAGAGTGTGTTCACTGCGGGAAGACTTTTGTTACCAAGTACAGGTTAAAAGTCCATCTTAAACAAGTCCACCCATCAGGCCAAGAAGTCAGCTGTCCTCAATGTTTGAAGAGTTTCAAGAATTCCATGTTGTTACAACGGCATGTCAAGTGGGCCCACCCACCAGATGGGCTGAAGTATAGATGCCAGGAATGCAACCGCATGCTCCCCTCCATAGACGGTTACAAACGTCACATGTCATCCGTCCACAATTCTCACCCCGTCGCCTGCTCATCATGTCCCAAGACCTTCAAGACCACGTCCAGTCTGAACAGACACGTTGGTACCGTCCATGGTGAGGTCAAGGTGGAAAGGAAGAAGTGTAAACCAGGAGAGATTGAGTGTGGAGGCTGTGATAAGAAGTTTTGTACTGAGAATGGTCTGTCATGGCACACGGAGAAGTTCCACTCAGCAGACGCGCCGGAGCTGGTCTGCCAGATCTGCAGCAAGGAGTTCGGAGACATGAACAATCTGAGGAGACATGTTTATACCGTGCATTCTGTGCAGACGGCGACTTGCAACATATGCTTCAAAACTTACAAAAGCCCGCTGAATCTGCAAAGGCACATTCGAATCACCCACGCACCGCCCGAATCTGCCAAAGTCTGCGAACTGTGCaacaaaacctttaaatgcTCGATGCATTTGAAGATTCACTGCAATGCGGTCCATTCAAAAGACGGTGAATATTCGTGCAGTGTGTGTGATAAAGTGTTTTCATCGaagaagtatttaataaaacattcaaagacccaCAATGTTAAGGAGTATCCGTGTAGTCTCTGTGATAAGTTGTTTAAATCGGTTGATGATGTGAATAGGCATGTGAAGAGAGTGCATTTGAAGAAGGGAAGTGAATTTGATGATGGTGGTGAATCGCAAATAAATTGTGGTGACGTTGAGGTGGAAATTAAGGTTGAGGAAGATGGTGGACAGTGGTCGGAATCTATACAAGTgtga
- Protein Sequence
- MLIPVKFVESSRKTHLKFVHSTEDDVVECDQCFRTFKTVQHLRSHKSSVHNEGSTEEPCEHCDKTFPNKKKLNNHVFFCHPSPEENVECVHCGKTFVTKYRLKVHLKQVHPSGQEVSCPQCLKSFKNSMLLQRHVKWAHPPDGLKYRCQECNRMLPSIDGYKRHMSSVHNSHPVACSSCPKTFKTTSSLNRHVGTVHGEVKVERKKCKPGEIECGGCDKKFCTENGLSWHTEKFHSADAPELVCQICSKEFGDMNNLRRHVYTVHSVQTATCNICFKTYKSPLNLQRHIRITHAPPESAKVCELCNKTFKCSMHLKIHCNAVHSKDGEYSCSVCDKVFSSKKYLIKHSKTHNVKEYPCSLCDKLFKSVDDVNRHVKRVHLKKGSEFDDGGESQINCGDVEVEIKVEEDGGQWSESIQV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -