Nnoc023115.1
Basic Information
- Insect
- Nomophila noctuella
- Gene Symbol
- -
- Assembly
- GCA_958496325.1
- Location
- OY292509.1:4588950-4592344[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 1.8 1.5e+02 3.8 0.1 2 19 15 32 14 34 0.93 2 22 1.1 90 4.4 2.6 1 23 83 106 83 106 0.92 3 22 0.75 60 5.0 0.0 2 23 135 157 134 157 0.89 4 22 0.0013 0.1 13.7 0.5 1 23 179 202 179 202 0.93 5 22 8.9e-05 0.0072 17.3 0.1 3 23 209 230 207 230 0.93 6 22 0.0011 0.088 13.9 0.3 1 23 235 258 235 258 0.90 7 22 0.00027 0.022 15.8 0.7 2 23 264 286 264 286 0.93 8 22 0.00038 0.03 15.4 2.1 1 23 335 357 335 357 0.95 9 22 0.072 5.8 8.2 0.0 2 23 385 407 384 407 0.95 10 22 0.042 3.4 8.9 0.2 2 23 428 450 427 450 0.94 11 22 4.6e-05 0.0037 18.2 0.8 2 23 456 477 455 478 0.94 12 22 0.00012 0.0098 16.9 1.3 1 23 483 506 483 506 0.98 13 22 0.015 1.2 10.3 0.7 2 23 509 531 509 531 0.95 14 22 4.5 3.6e+02 2.5 3.3 2 20 538 556 537 558 0.92 15 22 0.012 0.95 10.7 2.2 1 23 612 635 612 635 0.95 16 22 0.48 39 5.6 0.1 2 23 708 731 707 731 0.94 17 22 0.00021 0.017 16.2 0.1 3 23 738 759 737 759 0.94 18 22 0.049 3.9 8.7 6.4 2 23 764 786 763 786 0.94 19 22 0.0014 0.11 13.6 3.5 1 23 791 814 791 814 0.97 20 22 2e-05 0.0016 19.3 5.3 1 23 818 841 818 841 0.97 21 22 0.0015 0.12 13.5 0.7 2 23 848 869 847 869 0.96 22 22 0.00013 0.01 16.8 4.0 1 23 875 897 875 897 0.97
Sequence Information
- Coding Sequence
- ATGAAAAAGGCTCACTTCCACAGTAGCGATAGGGAAAACTTACAATGCGGCTTTTGTTTGAAAACTCTGACCACGAAGATAGCATTTCTCAACCACGCAGCGCAATGTAACGTAAACGACACGTCTAAGCTGTACAGCGAGTCTACTGACAGCGAAAAGAAACCTAATGTAGTTCAGATAAGAAATAATATCGCGTGTATTGTGAACATGTCGACTGCGTTACCGTTTAAATACTTTATGAACAAATTCAGATGTTTTTACTGTTCCAAAGATTTTCTGGAGTGCGCCGATTTGAAGGAACACACAGTGAGGGAGCATCCTGTTTGTGACAGTAAATTGAAGGCGATGAGACTTCGGAATAGAGAGCATGGACTTAAAATCAAACTTGACGTTGCGTCTCTATCTTGTAAAGTGTGTTTTAAGCCTATAGATGATTTAGAAACGTTAATAGAACATATAGTAGCTGAACACAATGCTGAATACGACAAAACTGTTGACcataacatacaacctttcaagTTAGTAAGAGACAATTTCGCTTGTCCTTTCTGCGAGGAAGCGTTCAGATATTTCAGCAGTCTTCTTAAGCATGTAAGTCAATCTCACACTGACAATAGAATCATTTGCGTCTACTGTGGAAAGACTTTTAGGACCGATCCGAGTCTTCGAGCTCATATATCTCTTCGTCATAAACCTAACGGATATAAATGTACAGTATGTAGTCTAGATTTTACGACCAAGGCAGCTTTAAGAGATCATTCAGGGAAAGCGCACGGTAGTAAAGTTGCCAAGTGCTTAGAATGCTCGGAGAAATTCACCTCCCAATATTCGATGCAGAGGCATATGATTGATGCGCATGCGACGGGACACAAGTGCACTTATTGCGATGAAAAGAACGTGCCCCGGGCCCCTTACGAAGGCTGCGCCTCTGAGCGCCGGAGGAAAAACTTGAAAACCCTTTTCAACTTCACCTCCATCATACCTTTTAAGTGGCGAGGTCGTTTCCTCTGCTTCTATTGCCCTAAAAACTTTACCGACTATGCAGAGTTCAAATCACACACGAAATCCCACGGTTCTTGCACCACTAAAGATTATTCCCTACGATCTATCAAAGGCAGCCATGTGGAAATTAAGATTGACGTCTCAGAAATTGTTTGTAAAGTCTGCACCGAACCGTTTGGCGATTGGAATGAAATAGTCGATCATTTGGCGACGAAACACGATATGGAGTATGATAAAACAGTAGAAGTACCGCTACAAGCGTATAGGTTGGCTGATTTGAGTTGTTTATTCTGCGCGGAGAAGTTTAGCTATTTTGGGAATCTAATAAGTCACGTCAACGTAAATCATCCACAGAATAAGTTAATATGTGACGACTGCGGCGTTTCCTTCAACAAGAAGAGAGATTTGGCCGTCCATTATAGGTATCACCATCGCAAAGGCGGGTATCCTTGCGATCAGTGCACGCAGACCTTCGAAAACTTCTATTCGTTACGATCGCATCGGAACACCGCTCATTTTAGGAAGTGTTCTAGTTGTAACTTGCGCTTTGGTACTATGACGCTGCTTCAGAAACATATTTTGTTGGAACATCCGGATAATGGGGATTTGACATGCGAATATTGCTCTAAGCTTTGTCACACGCTTCAGGGTTTAAGGCAACATAAAAGTAAATGTAGAGTCAAAATGATATGTACTTCTGAAGACGGTGATTCCTCTCTAGCGGTATATAATGTCCAGCCGGCGAAAAGGCAGAATATAAAGCAAATAAGACAAAATATACAGTGTGTATTAAATATGTCGACAGCAGTCCCTTTTAAATTCTTCTCCAAATTTTCCTGCTTTTATTGTTCGAAGAAGTTCTTCGAATTTGAAGAACTAAAACAACATACGGCGATGGAACATCCCATATGTGATTTGGAGTCGAAATACATGAGGAAGTGTAAAGGAGAACGGATAAATGTCAAAGTTGATGTATCGTCGTTAACATGTAAACTGTGTCTTCAGCCCATGGAAGAATTGCATACTCTCATCGACCATTTGATATCAGAACATAAGGCTAACTTTGATAAGTCAGCAGCTAGGTGTTTAGACCCATACAAGATTATCAAAGACAATATACCATGCCCTCTATGTCCGGACAAAAGCTTTCGATACTTCGGAATCCTACTTCGCCATATAAACTCTGACCATagtaacaacaacaaaatctGTGATTTCTGCGGTCGCGCGTTTAGAAACGTTGTGAATCTCAACGTGCATATTTCATACGCCCATGCTGGTACGTGTACTTGCGACGTTTGCGGGATGAAATGCAAGAACCAATGGTGTCTTGCAAGGCACCGAGCTAAGACCCATGATGCTAAAGATTTCAAATGCCCTAAATGTCCGGAGCAGTTTCAATCCCAATATCATAAACAGAAGCATCTGATAAAAATGCATGATGTTGGACACAAATGCGTTCATTGTGGGAAAATGTTTACGAGAAATTCCTTCATGAAGGATCATATAAGGAGGattcatttaaaagaaaagaacGTATCCTGCTCGCTCTGTTCGGAGAGGTTCTTCGATAATTATCTTCTTAAAATGCATATGGTTAAGCACGAGGGAGAGAGGAGGTTTTGCTGCAGTGTATGTGGGAAGGCATTTCTACGTAGAAGTAATTTGCATTCACATATGGAAATGCATAAGAAGTACGGGCATGCTGTTGAAACGGTACAAGAGATGATCAATTAG
- Protein Sequence
- MKKAHFHSSDRENLQCGFCLKTLTTKIAFLNHAAQCNVNDTSKLYSESTDSEKKPNVVQIRNNIACIVNMSTALPFKYFMNKFRCFYCSKDFLECADLKEHTVREHPVCDSKLKAMRLRNREHGLKIKLDVASLSCKVCFKPIDDLETLIEHIVAEHNAEYDKTVDHNIQPFKLVRDNFACPFCEEAFRYFSSLLKHVSQSHTDNRIICVYCGKTFRTDPSLRAHISLRHKPNGYKCTVCSLDFTTKAALRDHSGKAHGSKVAKCLECSEKFTSQYSMQRHMIDAHATGHKCTYCDEKNVPRAPYEGCASERRRKNLKTLFNFTSIIPFKWRGRFLCFYCPKNFTDYAEFKSHTKSHGSCTTKDYSLRSIKGSHVEIKIDVSEIVCKVCTEPFGDWNEIVDHLATKHDMEYDKTVEVPLQAYRLADLSCLFCAEKFSYFGNLISHVNVNHPQNKLICDDCGVSFNKKRDLAVHYRYHHRKGGYPCDQCTQTFENFYSLRSHRNTAHFRKCSSCNLRFGTMTLLQKHILLEHPDNGDLTCEYCSKLCHTLQGLRQHKSKCRVKMICTSEDGDSSLAVYNVQPAKRQNIKQIRQNIQCVLNMSTAVPFKFFSKFSCFYCSKKFFEFEELKQHTAMEHPICDLESKYMRKCKGERINVKVDVSSLTCKLCLQPMEELHTLIDHLISEHKANFDKSAARCLDPYKIIKDNIPCPLCPDKSFRYFGILLRHINSDHSNNNKICDFCGRAFRNVVNLNVHISYAHAGTCTCDVCGMKCKNQWCLARHRAKTHDAKDFKCPKCPEQFQSQYHKQKHLIKMHDVGHKCVHCGKMFTRNSFMKDHIRRIHLKEKNVSCSLCSERFFDNYLLKMHMVKHEGERRFCCSVCGKAFLRRSNLHSHMEMHKKYGHAVETVQEMIN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -