Nnoc018823.2
Basic Information
- Insect
- Nomophila noctuella
- Gene Symbol
- -
- Assembly
- GCA_958496325.1
- Location
- OY292502.1:9205982-9225074[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 4.5e-05 0.0037 18.2 6.9 1 23 194 216 194 216 0.98 2 13 2.5e-06 0.0002 22.2 0.2 3 23 230 250 229 250 0.98 3 13 5e-05 0.004 18.1 2.2 2 23 259 280 259 280 0.98 4 13 0.00034 0.027 15.5 2.1 1 23 286 308 286 308 0.98 5 13 1.1e-05 0.0009 20.2 1.2 1 23 314 336 314 336 0.98 6 13 1.8e-05 0.0014 19.5 8.4 2 23 343 364 342 364 0.97 7 13 1.2e-05 0.00093 20.1 0.8 1 23 370 392 370 392 0.98 8 13 1.4e-05 0.0011 19.9 1.4 1 23 398 420 398 420 0.98 9 13 0.00035 0.028 15.4 1.2 1 23 426 448 426 448 0.98 10 13 0.0018 0.14 13.2 2.0 1 23 454 476 454 476 0.97 11 13 0.00014 0.011 16.7 1.4 1 23 482 504 482 504 0.97 12 13 2e-05 0.0016 19.4 1.9 1 23 510 532 510 532 0.98 13 13 0.00012 0.0097 16.9 2.5 1 23 647 669 647 669 0.99
Sequence Information
- Coding Sequence
- ATGGCTACTGCGAATAAAACTCAGACTTTGAAGTTCGACAAAATATGTCGGGCGTGTTTGCAGATAAAGAAGGACATGCGGCCTCTGTTCGAGCAGCTGACGGCTACGATGTTGATGGGCATAACGAAAGTCCAGGTGGCAGTGGGCGACGGCCTGCCCTCCCAGCTATGCTTGCAATGCGTCCACCAGATATCACGCTGCCACGCGTTCAAAGACTTGGTGGAGAGGAACGACATCACGCTCCGGGAGGCTCACGCCAAGATGGTGACTGCAGAGGTGCTCAACTTTGATAAAGAAGAGAAGGAAAAACTCCTCCTCCAAGGCTGCTCGGAGCCCTATATGCAGTACATGGAACCCATAGTGAGCACGGCAAGCCAATACCTCGACACATTCTTCGCAGGCGACGTGCCCACGCCGCAGACTCCGGGGCAGAAGGAGGATACGTTTGAAAACAAGCCGGAGCAAGCACAGGTGTCCACCGAAGTAGCCAACAAGGACGACGACGCTCTCAACTCGGACGAGGAGTCCTACCTCCAGATGGTGGTGTTCCAAGCGACGTCATCGGTGTCTCCTGGGCGACACGTGTGCAACCTCTGCCACAAGGAATTCAAGCATGCTCGCTGGCTAAAGCAGCATATGCGATCTCATTCTAACTGGATCAAGGCTAACTGCAAGAAGCCGCCGATGTGCCCGATATGCGAGAGGACCTTCAAGGGCCCGGGCATGCTCAAAATGCACATGCGCACGCACGAGCAGCGTCCGCCCAAGCAGCCGACGTGCTCAGTCTGCCAGCGGACGTTCGCGACCAAGACGCTGCTGTACCGGCACCGGCAGACGCACTTCGAGCAGAAGACGCACCAGTGCACGGTGTGCGAGAAGCGCTTCTTCAGCGGGTACGCGCTGCGCTCGCACATGGCGCGCCATCGCGGCGAGCGGCCCTACGTCTGCTCTATGTGCACTAAGAGCTTCTACAACCCGACGGATCTCAAGGTCCACTTCCGCTTACACACGGGCGAGAAACCTCTCAAATGTTCGGAGTGCAACAAGACTTTCCGTCGTCACTCGACGCTATGCCAGCACATGAAGAAGCACCGCGGCATCAGGAACCACGTGTGCACCGTCTGCAACAAGGCCTTCTACGAGGTGTCCAAGCTGAACGCGCACATGAGAGTGCACACCGGCGAGCGCCCATTCGAGTGTCAGTTCTGCGAGCGCAAGTTCGCGCAGCAATCGGCGCTGATCTACCACCGGCGCACGCACACCGGCGAGAAGCCCTACTCCTGCAAGCTCTGCACGGCAAGGTTCACCACCTCCTCCGCACGGAACAATCATATGGTCACACACACGGGGAATAAGAAGTTCGTATGTCCAGTCTGCTTCAAGGGCTGCACGTCTCGCACGGAGCTGCGCGTGCACTCGAGCAAGCACACGGGCGAGAAGCTGTTCGCGTGCGAGCTGTGCTCCCAGCGGTTCAGCTCGGCCTCCTACCTCGCCGTGCACCGCCGGCACCACACCGGCGAGCGGCGCTACCACTGCGCCGTCTGCGGGAAAGGCTACATAGAATCCAGTTCGTACAAGAAGCACATGAAGACACACGAGGTCAAAGTGGATTCGGAGTCGTCCAACTCTGAGAACAGCTCGGAGACGCAGCCGCAGGTGAAGTCGGACGACGCCGTCGCCGACGTGCAGGCGAACGTCACTGTGGGCCCGGAGACAGATGAGACTCAGggccctgggcacgtgcccgtTTTAGTGGTAAACACGGGTCCCTTAAAAGTGGTAGATTCGGAGTCGTCCAACTCTGAGAACAGCTCGGAGACGCAGCCGCAGGTGAAGTCGGACGACGCGGTCGCAGACGTGCAGGCGAACGTCACTGTGGGCCCGGAGACGGATGAGACTCAGGGTCGCTCCACGCCTTACGAGATGACACCGAAGCGGTACAAGTGTGGAATCTGCGTCAAGACTTACATGTACCTACACAGCCTTAAGAAACATATGGCCACACATATACCCGACCAAACAATACAGCTCCAACAGGCTCAACtccaacaacaacaacagcaacaacaacagcagcaacaacaacaacaacaacaacaagcCCAACAACAGGCTCACCAACACGCGCAGCAGCAagtgcagcagcagcagcagcagctgcagcagcaggcCGTGCTGCAGGTGGGCGGCGTGCAGCAGCTGGCGGTGCCCATACACGCGCAGCACGTGCAGCAGGGCATCGTGCAGAGCAGTCCACACACGTACCCTGTGATATCGTCAGTGCAATCGCTGCAGTTGCAACAGACGCAGCAGCAGGTTAACACGCAACAGCCGCAACAGCTACAAGTTCAAACTATACAAATTCACCCGCAGCACCAGCCAATACAAATACACGCGGTGGGAGTGCAGCAAGTTCAGCAACAACAGCTGCACGTGGCGACGTCGTCGTGCCAAACCATGCTGCCTAATATTCTGCAGCTGCAGCCGGGCGCGGCAGTAGCGGTGTCGGGCCTGGGCCAGCAGGAgctgggcggcgtggcgcaccgCATCATCCTGCAGCCGCCCGGCACACACGTCGCGCATCCCGCCGTCTACACCATACACCACTGA
- Protein Sequence
- MATANKTQTLKFDKICRACLQIKKDMRPLFEQLTATMLMGITKVQVAVGDGLPSQLCLQCVHQISRCHAFKDLVERNDITLREAHAKMVTAEVLNFDKEEKEKLLLQGCSEPYMQYMEPIVSTASQYLDTFFAGDVPTPQTPGQKEDTFENKPEQAQVSTEVANKDDDALNSDEESYLQMVVFQATSSVSPGRHVCNLCHKEFKHARWLKQHMRSHSNWIKANCKKPPMCPICERTFKGPGMLKMHMRTHEQRPPKQPTCSVCQRTFATKTLLYRHRQTHFEQKTHQCTVCEKRFFSGYALRSHMARHRGERPYVCSMCTKSFYNPTDLKVHFRLHTGEKPLKCSECNKTFRRHSTLCQHMKKHRGIRNHVCTVCNKAFYEVSKLNAHMRVHTGERPFECQFCERKFAQQSALIYHRRTHTGEKPYSCKLCTARFTTSSARNNHMVTHTGNKKFVCPVCFKGCTSRTELRVHSSKHTGEKLFACELCSQRFSSASYLAVHRRHHTGERRYHCAVCGKGYIESSSYKKHMKTHEVKVDSESSNSENSSETQPQVKSDDAVADVQANVTVGPETDETQGPGHVPVLVVNTGPLKVVDSESSNSENSSETQPQVKSDDAVADVQANVTVGPETDETQGRSTPYEMTPKRYKCGICVKTYMYLHSLKKHMATHIPDQTIQLQQAQLQQQQQQQQQQQQQQQQQQAQQQAHQHAQQQVQQQQQQLQQQAVLQVGGVQQLAVPIHAQHVQQGIVQSSPHTYPVISSVQSLQLQQTQQQVNTQQPQQLQVQTIQIHPQHQPIQIHAVGVQQVQQQQLHVATSSCQTMLPNILQLQPGAAVAVSGLGQQELGGVAHRIILQPPGTHVAHPAVYTIHH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -