Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.51 8.2e+02 0.7 0.0 18 29 31 42 27 49 0.84

2 10 0.084 1.4e+02 3.2 2.1 10 28 53 69 50 88 0.78

3 10 1.2 1.9e+03 -0.5 5.0 6 36 76 108 71 111 0.74

4 10 0.019 31 5.3 1.7 13 29 128 144 119 155 0.78

5 10 0.00015 0.24 12.1 2.3 5 38 149 177 146 182 0.87

6 10 0.00014 0.23 12.1 3.5 14 41 189 213 179 215 0.82

7 10 0.09 1.5e+02 3.1 0.5 17 30 220 233 214 243 0.78

8 10 0.00039 0.63 10.7 4.0 14 40 245 268 236 271 0.83

9 10 0.001 1.7 9.3 0.4 18 41 277 297 273 299 0.79

10 10 7.5 1.2e+04 -3.0 0.1 18 26 305 313 301 322 0.75

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.51	8.2e+02	0.7	0.0	18	29	31	42	27	49	0.84
2	10	0.084	1.4e+02	3.2	2.1	10	28	53	69	50	88	0.78
3	10	1.2	1.9e+03	-0.5	5.0	6	36	76	108	71	111	0.74
4	10	0.019	31	5.3	1.7	13	29	128	144	119	155	0.78
5	10	0.00015	0.24	12.1	2.3	5	38	149	177	146	182	0.87
6	10	0.00014	0.23	12.1	3.5	14	41	189	213	179	215	0.82
7	10	0.09	1.5e+02	3.1	0.5	17	30	220	233	214	243	0.78
8	10	0.00039	0.63	10.7	4.0	14	40	245	268	236	271	0.83
9	10	0.001	1.7	9.3	0.4	18	41	277	297	273	299	0.79
10	10	7.5	1.2e+04	-3.0	0.1	18	26	305	313	301	322	0.75

Coding Sequence: ATGTGGGAGAATCATGCTGATCTAATGGGTCCAAAGAAAAGAGGGagacctaaaaaaatattgactacTGAAAACGTTGCTCCACTCCAGGTGTGTGAAATATGTAGTGCTGTGTTTAATTCCGAAGTCGAGTTTATGAATCATAATGATCTGGAACATCCTGAGAGATCTCTTCGTTGCAATCTATGTTTGAAGgtatttGCTTCAGTCAAGTCGGCAGCACGTCATAGAAGTATTTGCAAGCAGATAGAGAGAAAACATAAGTGTAGTACATGTGGGCTGAAATTTGCCTACgaaatatctttaaacaagCATATATTACGTTACCATGAAGGGCAGAGTGTATCTGTTAAATTTATGGACACAAAATCTAAAGATGAAGAAGACAAACAATATCAGTGTGATACATGCAGCAAGCAATTTTCAAGGAAAGAGTTACTTGCTAAGCATACTAGGACACATTCCGATAAATTATATGAGTGTGACATTTGCAAGAAAAAGTTCAATAGAAGTGACAACCTAAGATCGCATAAGAGGACTCATGACCCGCGCGAGAAGACCAAAGCTAACACATGCCTGTGCCTGTACTGCGGCCGCAGCTTCAACAACTCTTCCAACCTCATCGTCCACATGCGACGGCACACTGGTGAAAAGCCATACAAGTGTGACTTTTGTGGAAAGGGTTTCCCTCGCTCGTCGGATCTTCAGTGTCACAGACGGTCGCACACGGGCGAAAAACCCTGCGTTTGCCGTGTTTGTGGCAAAGGGTTCTCGCGTAGCAACAAGCTATCTCGACACATGCGTGTGCATACCGGCCTCAAGCCCTACAAGTGTACCTATTGTGAAAAGGCATTTTCTCAAAGCAATGACCTGACTTTGCATATACGTCGGCATACAGGAGATAAGCCTTATATTTGCGAGGTGTGTGGTGATAGGTTTATTCAGGGTACAGCGTTGCACAACCACAGGCGTACCCACGGCCATTTCCCTCCGGCTACCACAGATTCTCAGAATCAAAGCCACTCAATCACTTATACCGTTCAAAATATTTCCCATCAATCTACTAATTAG
Protein Sequence: MWENHADLMGPKKRGRPKKILTTENVAPLQVCEICSAVFNSEVEFMNHNDLEHPERSLRCNLCLKVFASVKSAARHRSICKQIERKHKCSTCGLKFAYEISLNKHILRYHEGQSVSVKFMDTKSKDEEDKQYQCDTCSKQFSRKELLAKHTRTHSDKLYECDICKKKFNRSDNLRSHKRTHDPREKTKANTCLCLYCGRSFNNSSNLIVHMRRHTGEKPYKCDFCGKGFPRSSDLQCHRRSHTGEKPCVCRVCGKGFSRSNKLSRHMRVHTGLKPYKCTYCEKAFSQSNDLTLHIRRHTGDKPYICEVCGDRFIQGTALHNHRRTHGHFPPATTDSQNQSHSITYTVQNISHQSTN

Sequence clustering based on sequence similarity using MMseqs2