Nnoc019344.1
Basic Information
- Insect
- Nomophila noctuella
- Gene Symbol
- NFYC
- Assembly
- GCA_958496325.1
- Location
- OY292503.1:4248171-4256815[-]
Transcription Factor Domain
- TF Family
- NF-YC
- Domain
- NF-YC domain
- PFAM
- AnimalTFDB
- TF Group
- Other Alpha-Helix Group
- Description
- Diverse DNA binding proteins are known to bind the CCAAT box, a common cis- acting element found in the promoter and enhancer regions of a large number of genes in eukaryotes. Amongst these proteins is one known as the CCAAT-binding factor (CBF) or nuclear transcription factor Y (NF-Y) [1]. CBF is a heteromeric transcription factor that consists of two different components both needed for DNA-binding. The HAP protein complex of yeast binds to the upstream activation site of cytochrome C iso-1 gene (CYC1) as well as other genes involved in mitochondrial electron transport and activates their expression. It also recognises the sequence CCAAT and is structurally and evolutionary related to CBF. The first subunit of CBF is known as CBF-A or NF-YB in vertebrates, and HAP3 in budding yeast. The second subunit is known as CBF-B or NF-YA in vertebrates and HAP2 in budding yeast. It is a protein of 265 to 350 amino-acid residues which contains a highly conserved region of about 60 residues. This region, called the 'essential core' [2], seems to consist of two subdomains: an N-terminal subunit-association domain and a C-terminal DNA recognition domain.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 3.9e-64 1.1e-59 202.8 7.5 15 142 35 162 30 181 0.90 2 12 1.8e-06 0.049 13.7 4.2 197 255 180 235 158 246 0.77 3 12 2.4e-05 0.67 10.0 0.0 217 255 266 301 250 313 0.77 4 12 2.4e-05 0.67 10.0 0.0 217 255 332 367 316 379 0.77 5 12 2.4e-05 0.67 10.0 0.0 217 255 398 433 382 445 0.77 6 12 2.4e-05 0.67 10.0 0.0 217 255 464 499 448 511 0.77 7 12 2.4e-05 0.67 10.0 0.0 217 255 530 565 514 577 0.77 8 12 2.4e-05 0.67 10.0 0.0 217 255 596 631 580 643 0.77 9 12 2.4e-05 0.67 10.0 0.0 217 255 662 697 646 709 0.77 10 12 2.4e-05 0.67 10.0 0.0 217 255 728 763 712 775 0.77 11 12 1.5e-07 0.0042 17.2 4.1 217 266 794 843 779 850 0.78 12 12 1 2.8e+04 -6.2 10.5 178 213 841 877 832 880 0.77
Sequence Information
- Coding Sequence
- ATGTCGGTGTGTTTTTATGTGCCAGCTGATCAGGGTGGGGCCTCCGGAGTGGCCGAGGAGGTGGAAGCCGAGGTCATGGAAGACATACCCATCGAGACAACGCAGCAGCAGACGCTTCAGGAGTTCTGGGCCAAAGTCATGGATGATATCAAGAAAATTACTGCAGAAGACTTCAAAACCCAAGCATTACCGTTGGCTCGCATAAAGAAGATCATGAAGCTGGATGAGGAGGTGAAGATGATATCCGGGGAGGCTCCGGTTCTCTTCGCGAAGGCAGCGGAGATATTCATACATGAACTTACTCTGCGTGCCTGGTCGCATACTGAAGATAATAAGAGAAGGACTTTGCAGCGCAACGACATAGCAATGGCGATATCTAAATCCGACCAGTTCGATTTCCTCATCGACATCGTCCCTCGCCACGAGGTCAAAGCCAGCAAGCCGAGAGACGACCCGCCCCGACCGAGTCCTTCTACAGAACAGGTGTCGCACCACCAGCAGGCCCCGATGCAGAGCAGCGCGCAGCCGCAGATAGTGCTGCAGCCCTGCGCGCAAGTCGTGCAGACGTCGGCTGCGGCGGGCTCGTCAGGCAGCGTGTCGGTGTCGCCGCAGCCCGTCGCGctggtgcagcaggtcgtcacgCCCTCCGGGGAACTGCAGCAGCTGCCGGTGAGTGTTACTGCAATGTATTGCAGACGTCGGCAGCGTGTCGGTGTCGCCGCAGCCCGTCGCGctggtgcagcaggtcgtcacgCCCTCCGGGGAACTGCAGCAGCTGCCGACGTCGGCAGCGTGTCGGTGTCGCCGCAGCCCGTCGCGctggtgcagcaggtcgtcacgCCCTCCGGGGAACTGCAGCAGCTGCCGGTGAGTGTTACTGCAATGTATTGCAGACGTCGGCAGCGTGTCGGTGTCGCCGCAGCCCGTCGCGctggtgcagcaggtcgtcacgCCCTCCGGGGAACTGCAGCAGCTGCCGACGTCGGCAGCGTGTCGGTGTCGCCGCAGCCCGTCGCGctggtgcagcaggtcgtcacgCCCTCCGGGGAACTGCAGCAGCTGCCGGTGAGTGTTACTGCAATGTATTGCAGACGTCGGCAGCGTGTCGGTGTCGCCGCAGCCCGTCGCGctggtgcagcaggtcgtcacgCCCTCCGGGGAACTGCAGCAGCTGCCGACGTCGGCAGCGTGTCGGTGTCGCCGCAGCCCGTCGCGctggtgcagcaggtcgtcacgCCCTCCGGGGAACTGCAGCAGCTGCCGGTGAGTGTTACTGCAATGTATTGCAGACGTCGGCAGCGTGTCGGTGTCGCCGCAGCCCGTCGCGctggtgcagcaggtcgtcacgCCCTCCGGGGAACTGCAGCAGCTGCCGACGTCGGCAGCGTGTCGGTGTCGCCGCAGCCCGTCGCGctggtgcagcaggtcgtcacgCCCTCCGGGGAACTGCAGCAGCTGCCGGTGAGTGTTACTGCAATGTATTGCAGACGTCGGCAGCGTGTCGGTGTCGCCGCAGCCCGTCGCGctggtgcagcaggtcgtcacgCCCTCCGGGGAACTGCAGCAGCTGCCGACGTCGGCAGCGTGTCGGTGTCGCCGCAGCCCGTCGCGctggtgcagcaggtcgtcacgCCCTCCGGGGAACTGCAGCAGCTGCCGGTGAGTGTTACTGCAATGTATTGCAGACGTCGGCAGCGTGTCGGTGTCGCCGCAGCCCGTCGCGctggtgcagcaggtcgtcacgCCCTCCGGGGAACTGCAGCAGCTGCCGACGTCGGCAGCGTGTCGGTGTCGCCGCAGCCCGTCGCGctggtgcagcaggtcgtcacgCCCTCCGGGGAACTGCAGCAGCTGCCGGTGAGTGTTACTGCAATGTACTGCAGACGTCGGCAGCGTGTCGGTGTCGCCGCAGCCCGTCGCGctggtgcagcaggtcgtcacgCCCTCCGGGGAACTGCAGCAGCTGCCGACGTCGGCAGCGTGTCGGTGTCGCCGCAGCCCGTCGCGctggtgcagcaggtcgtcacgCCCTCCGGGGAACTGCAGCAGCTGCCGGTGAGTGTTACTGCAATGTACTGCAGACGTCGGCAGCGTGTCGGTGTCGCCGCAGCCCGTCGCGctggtgcagcaggtcgtcacgCCCTCCGGGGAACTGCAGCAGCTGCCGACGTCGGCAGCGTGTCGGTGTCGCCGCAGCCCGTCGCGctggtgcagcaggtcgtcacgCCCTCCGGGGAACTGCAGCAGCTGCCGGTGAGTGTTACTGCAATGTATTGCAGACGTCGGCAGCGTGTCGGTGTCGCCGCAGCCCGTCGCGctggtgcagcaggtcgtcacgCCCTCCGGGGAACTGCAGCAGCTGCCGACGTCGGCAGCGTGTCGGTGTCGCCGCAGCCCGTCGCGctggtgcagcaggtcgtcacgCCCTCCGGGGAACTGCAGCAGCTGCCGATCCACCTGACGCAAGCGCAGCTGAACATGATCCGGCTGCAGGTGCAGAACAACCCGTCGCAGCCGATCATCATCCAGGCGCAGCCGCAGCACTCGCCGCAGATCATACAGGTGTCGTCGCAGGCGCAGCACGCGCCGCAGCAGCAGGTGTTCCTGGCGCAGGTGGCCGCGCAGCCGCAGCCAGACTCCTAG
- Protein Sequence
- MSVCFYVPADQGGASGVAEEVEAEVMEDIPIETTQQQTLQEFWAKVMDDIKKITAEDFKTQALPLARIKKIMKLDEEVKMISGEAPVLFAKAAEIFIHELTLRAWSHTEDNKRRTLQRNDIAMAISKSDQFDFLIDIVPRHEVKASKPRDDPPRPSPSTEQVSHHQQAPMQSSAQPQIVLQPCAQVVQTSAAAGSSGSVSVSPQPVALVQQVVTPSGELQQLPVSVTAMYCRRRQRVGVAAARRAGAAGRHALRGTAAAADVGSVSVSPQPVALVQQVVTPSGELQQLPVSVTAMYCRRRQRVGVAAARRAGAAGRHALRGTAAAADVGSVSVSPQPVALVQQVVTPSGELQQLPVSVTAMYCRRRQRVGVAAARRAGAAGRHALRGTAAAADVGSVSVSPQPVALVQQVVTPSGELQQLPVSVTAMYCRRRQRVGVAAARRAGAAGRHALRGTAAAADVGSVSVSPQPVALVQQVVTPSGELQQLPVSVTAMYCRRRQRVGVAAARRAGAAGRHALRGTAAAADVGSVSVSPQPVALVQQVVTPSGELQQLPVSVTAMYCRRRQRVGVAAARRAGAAGRHALRGTAAAADVGSVSVSPQPVALVQQVVTPSGELQQLPVSVTAMYCRRRQRVGVAAARRAGAAGRHALRGTAAAADVGSVSVSPQPVALVQQVVTPSGELQQLPVSVTAMYCRRRQRVGVAAARRAGAAGRHALRGTAAAADVGSVSVSPQPVALVQQVVTPSGELQQLPVSVTAMYCRRRQRVGVAAARRAGAAGRHALRGTAAAADVGSVSVSPQPVALVQQVVTPSGELQQLPIHLTQAQLNMIRLQVQNNPSQPIIIQAQPQHSPQIIQVSSQAQHAPQQQVFLAQVAAQPQPDS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -