Nnoc020057.1
Basic Information
- Insect
- Nomophila noctuella
- Gene Symbol
- Smc4
- Assembly
- GCA_958496325.1
- Location
- OY292504.1:4829836-4839743[-]
Transcription Factor Domain
- TF Family
- CUT
- Domain
- Homeobox|CUT
- PFAM
- PF02376
- TF Group
- Helix-turn-helix
- Description
- The CUT domain is a DNA-binding motif which can bind independently or in cooperation with the homeodomain, often found downstream of the CUT domain. Multiple copies of the CUT domain can exist in one protein (eg Swiss:P10180).
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 0.043 2.4e+02 2.4 0.0 4 28 477 501 474 504 0.92 2 6 0.043 2.4e+02 2.4 0.0 4 28 527 551 524 554 0.92 3 6 0.043 2.4e+02 2.4 0.0 4 28 577 601 574 604 0.92 4 6 0.043 2.4e+02 2.4 0.0 4 28 627 651 624 654 0.92 5 6 0.043 2.4e+02 2.4 0.0 4 28 677 701 674 704 0.92 6 6 0.043 2.4e+02 2.4 0.0 4 28 737 761 734 764 0.92
Sequence Information
- Coding Sequence
- ATGTTTCAGGAAGGTGAAGAATACACAGTGGTGCCGAACAGTGAGATCGTCGTGTCAAGATCTGCTTCCAAGGACAACTCCTCATTCTACACCTTGAATGGCAGGAGAGTTCAGTTCAAGGAAGTGGCCAAGATGCTCAGAAGCCATGGAATTGATTTGGATCATAACAGATTTCTTATTTTACAgGGTGAAGTGGAACAAATTGCAATGATGAAACCAAAAGGGCTCACAGAACATGAATCCGGTATGCTGGAATATCTAGAAGATATTATAGGAACGTCTAGATATAAGGAACCAATAGAGAAACTATCACTAAAAGTAGAAGAATACAGCGAGATGAGAAAGGAGAAGTTGAACAGAGTCCGTCTAGTGGAGCAAGAGAAGCAGAAGCTGGAGCAGCCGATGCGGGAGGCGGTGGAGCTGATGAACCACACCAACACCGCGCTCCGGACCAGGAACATGCTGCTGCAGAAGTACATTCACGAAACTAACAAGATAATAgaaggaaaagagaaagagaTGGCGGAACTTAAAGAGAACCTTGCAGCGATTGATGAGAAGCTGGACAAGCTGAAGGAAGAGTTGCAAGAGAAAACTGCTGTCTTGAAAACTGGAACACAAAAGTACGATAAACTACAAAAGCAGAAAGAAGAGATAGCGGAGAAGTTGCAAGGCTGCAAGAGAAAGACGGTCACAGCCCAAGCCGATATCACGCAATCTAACAAGAAAAGGAAGAATCTAGAACAATTGCTTGAACAGGAGAAGGGGAAGCTTATTGATTTGGAATTGATTCCAGATAAAAACAAACGTGAAATTGAAGACTGTGAGAAGTTGCTGGTAAAACACAAAGAGAACAAGAAACAGGCTGAAGAGGAACTGCAAACTGTCATGGCTGGTGTAAgATCAAAAACCCAAGGCCTGCAAGAGACTAAAGACAAACTCCAAGCTAAACTAATGGACTTGAAGAAGATAGTGGATGAAGCGAACAAAGCTTACAAGTTAGCCGAGTCTGAGCTTAAGATATACTTAAGCACGGAACAGAAGGAGGCGGAGAAACTGGACAAGTTGAGGGAGGCTTACGAGAAGGCTGCTAAGGACTTGGACGAGAAGAAATCATTGCAAGACGAGTTAAAATCGACAGTTCCTACAAATGAACGACAGTTGAATGAGTTGCAAACGCAATTGCAGACTTTGAAGAGAGAGGAGTCCAGTATATCTGGCGAAGCGAGATCATTGagaGCGCAGTTAGAAGAGTCTCGTCAAGCAATGAGCGCAAATAGATCCCGAGGCAGGGTTTTAGATGCGCTTATGAAAGAGAAAAAGAGTGGAAGACTTCCAGGAATATTTGGGAGATTGGGCGACCTCGGAGGCATAGACGCTAAATACGACGTCGCAATATCAACATGTTGCGGAGCCCTAGACAACATCGTAGTGGACACGGTGGAGACGGCTCAAGCCTGCGTCGAGCACCTCAAGCGAGGCGATATAGGCCGAGCCACTTTCATAGCTCTGGACAAGCAGCAGCATCTGAGGCAGTACATGGACGCGAGGATAGTGAGTATAGTCCTAGACAACATCGTAGTGGACACAGTGGAGACGGCTCAAGCCTGCGTCGAGCACCTCAAGCGAGGCGATATAGGCCGAGCCACTTTCATAGCTCTGGACAAGCAGCAGCATCTGAGGCAGTACATGGACGCGAGGATAGTGAGTATAGCCCTAGACAACATCGTAGTGGACACGGTGGAGACGGCTCAGGCTTGCGTCGAGCACCTCAAGCGAGGCGATATAGGCCGAGCCACTTTCATAGCTCTGGACAAGCAGCAGCATCTGAGGCAGTATATGGACGCGAGGATAGTAAGTATAGCCCTAGACAACATCGTAGTGGACACGGTGGAGACGGCTCAAGCCTGCGTCGAGCACCTCAAGCGAGGCGATATAGGCCGAGCCACTTTCATAGCTCTGGACAAGCAGCAGCATCTGAGGCAGTATATGGATGCGAGGATAGTGAGTAAAGCTCTAGACAACATCGTAGTGGACACGGTGGAGACTGCCCAGGCCTGCGTCGAGCACCTCAAGCGAGGCGATATAGGCCGAGCCACTTTCATAGCTCTGGACAAGCAGCAGCATCTGAGGCAGTACATGGACGCGAGGGTTAATTATTCGATAGTGTCTGATGAGTGTAGAGTGAGTATAGCCCTAGACAACATCGTAGTGGACACGGTGGAGACGGCTCAAGCCTGCGTCGAGCACCTCAAGCGAGGCGATATAGGCCGAGCCACTTTCATAGCTCTGGACAAGCAGCAGCATCTGAGGCAGTACATGGACGCGAGGGTTAATTAG
- Protein Sequence
- MFQEGEEYTVVPNSEIVVSRSASKDNSSFYTLNGRRVQFKEVAKMLRSHGIDLDHNRFLILQGEVEQIAMMKPKGLTEHESGMLEYLEDIIGTSRYKEPIEKLSLKVEEYSEMRKEKLNRVRLVEQEKQKLEQPMREAVELMNHTNTALRTRNMLLQKYIHETNKIIEGKEKEMAELKENLAAIDEKLDKLKEELQEKTAVLKTGTQKYDKLQKQKEEIAEKLQGCKRKTVTAQADITQSNKKRKNLEQLLEQEKGKLIDLELIPDKNKREIEDCEKLLVKHKENKKQAEEELQTVMAGVRSKTQGLQETKDKLQAKLMDLKKIVDEANKAYKLAESELKIYLSTEQKEAEKLDKLREAYEKAAKDLDEKKSLQDELKSTVPTNERQLNELQTQLQTLKREESSISGEARSLRAQLEESRQAMSANRSRGRVLDALMKEKKSGRLPGIFGRLGDLGGIDAKYDVAISTCCGALDNIVVDTVETAQACVEHLKRGDIGRATFIALDKQQHLRQYMDARIVSIVLDNIVVDTVETAQACVEHLKRGDIGRATFIALDKQQHLRQYMDARIVSIALDNIVVDTVETAQACVEHLKRGDIGRATFIALDKQQHLRQYMDARIVSIALDNIVVDTVETAQACVEHLKRGDIGRATFIALDKQQHLRQYMDARIVSKALDNIVVDTVETAQACVEHLKRGDIGRATFIALDKQQHLRQYMDARVNYSIVSDECRVSIALDNIVVDTVETAQACVEHLKRGDIGRATFIALDKQQHLRQYMDARVN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -