Nmel006544.1
Basic Information
- Insect
- Nomia melanderi
- Gene Symbol
- nfxl1
- Assembly
- GCA_003710045.1
- Location
- NW:242836-247588[+]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 1.1 4.8e+03 -3.2 1.1 15 19 126 130 125 130 0.81 2 20 0.23 1e+03 -1.1 0.3 4 10 161 167 161 167 0.91 3 20 5.6e-08 0.00025 20.0 15.1 1 18 175 191 175 192 0.98 4 20 6.5e-09 3e-05 23.0 14.9 1 19 229 246 229 246 0.95 5 20 1.2 5.5e+03 -3.4 0.7 6 10 271 275 270 275 0.79 6 20 1.2e-05 0.053 12.6 11.1 1 18 281 299 281 300 0.93 7 20 9.7e-05 0.44 9.7 7.5 1 18 336 353 336 354 0.97 8 20 0.0068 31 3.8 7.6 1 12 388 399 388 399 0.94 9 20 1.9 8.4e+03 -4.0 1.3 6 10 409 413 409 413 0.96 10 20 1.1e-07 0.00051 19.1 13.4 1 18 419 436 419 437 0.91 11 20 1.7 7.6e+03 -3.9 1.3 6 10 466 470 465 470 0.76 12 20 0.00013 0.57 9.3 7.7 9 19 485 495 483 495 0.90 13 20 0.0025 11 5.2 6.2 1 12 505 515 505 515 0.95 14 20 0.85 3.9e+03 -2.9 5.8 14 18 547 551 547 552 0.89 15 20 1.6 7.4e+03 -3.8 0.6 6 10 578 582 577 583 0.57 16 20 0.0038 17 4.6 2.4 1 12 588 599 588 599 0.85 17 20 2 9.1e+03 -4.4 3.8 6 10 615 619 611 619 0.71 18 20 0.00028 1.3 8.2 17.5 3 19 628 644 627 644 0.92 19 20 2 9.1e+03 -6.5 3.4 9 13 650 654 650 654 0.71 20 20 0.00012 0.55 9.4 10.2 1 16 689 703 689 709 0.85
Sequence Information
- Coding Sequence
- ATGCAGAAATTTAGACGAGCTCAGgcacaaaataaaatagccaTTAATAAGCATTTAGAAGCGAATGCTTACTTAGAATCATCGAGTGAAGATGAGGATGACATAAATACAGAGGACATACAAAATGTGGTTGGCAAAGTTTTATCTGGTTACCAAGGAAAGGAGGCAGACGCGGAAAagattttatcttatttagTTAACGCGTTTCAATCTGGTAGCGCGGTTTGTTTAATATGCATTTCAACTATAAAGAAAGCAGATGCGatttgGAATTGCAGCAAGTGTTTTGCCTTTCTACATTTATCATGTATCTTGCACTGGACACGAGATAGTTTAAATGTGAAACGCGAGAAAGGTGTTGCACCTATTTGGGCATGtcCAAAGTGTCGCATGGAATATGGGCAGGACGAAGTTCCTCGTAACTATAAATGTTTCTGTAGAAAAGTCATAGACCCCGCGTTCCAACCATGGAACATACCACACTCTTGCGGAGACCCATGTGGCAAACTCCTGCAGCCAGAATGCGGTCACAAGTGTGTTTTACTCTGCCACCCTGGACCATGTCCCCCTTGCGCCAAAACAGTATCGGTTAAATGTTTCTGTGGCAAGCAAGCACCCGACCAACGAAGATGCAACGCCAAGGACTGGAGTTGTGGTACCGTATGCAACAAAAGGTACAAATCGTGTTCCCACACTTGCAAGCAACTGTGTCACGCAGGAGACTGTCCGCCTTGTCCAGAAACATTGACACTGGAATGTCACTGCAAGAGCAACACAGGCACAAGGCAGTGTTCCGAAGGCGCATGGAGTTGCGACAAGCCCTGTCGCCGTCCTCTGTCCTGCAACGTCCACGTATGTCAGAGCACGTGTCACTTACCCGGCGACTGTGGACCCTGCATTTTGGAAAAGAACAGAACCTGTCCCTGCGGTAAAAAGCGTTACGCGGTGTCTTGCAGTCAAGAGCAACTGCCAACCTGCGGGGACACATGTGGCAAACTCTTAGACTGCGGTTCGCATTTCTGTAACATGCGCTGTCACGCTGACCGATGTGGCCAATGCTTGGAAGTGGTTACAAAATCCTGTCGCTGCGACAGTTACACGAAGGAAGTCGCCTGCGCCAAGGAATTCCATTGCAACAAGAAGTGCGTGCAGATGCGCCTCTGCGGCAGGCACTTGTGCAACAAGAAATGCTGCGACTGCCTGATCAAGAACACGTTCAACGTATGCGAGAAGATTTGCGAGAACACCTTGAACTGCCGCAAGCACAAATGCTCAGCTCCGTGTCACAGCGGTCCCTGCTACCCGTGCGAGCGCACGGACGTCATTCAATGCAGATGCGGGTACAACAAGATAACAGTACCGTGCGGCACGACGAAGAGAGTAAGACCTCCACCCTGTAACAAGCCATGCAAGGTACCGCCGATCTGCCACCATCCCAAAAGGGAAACTCACAAGTGTCACCAGGGCGCGTGTCCACCTTGTAAGAAGATTTGCGATTTGACGTACAAGCGGTGCGGCCACTCCTGCGTCGCCGTTTGCCACACGAAGGTGTGGGTGAAGGTGAAGAAGAACGACGCGAAGGCGCAGCCCACGGGACCATGGGAGATACAGAAGGAGACCAAGCAGCTGAAAACGCTGCCGTGTCCGCCGTGCGAGGTCTCCGTGCCGGTCACGTGTCTGGGGGGACATGAAACACGCCCGTGGCCTTGCCACATGGCCAGGCCTACCTCTTGCGGAAGGCCTTGCGGAAGAATGCTGCCTTGCTCCAACGACACTTGCGAATTGGTCTGCCACAAGGTGTCATCTCCCGGAGATGCCGCGAATGGCACTCCGTGCATGGAATGCGAGAAGCCGTGCGCGTTCCCGCGACCGCAAGGCTGCACGCACACATGCCCGAAGCCATGCCACCCGGCGCCGTGCAGTCCCTGTAAACAGCTAGTTAAAATTCCCTGTCATTGCGGCATAGTCACTCTGTACCGGAGATGCGCTGAACTGACGTCGGCCACGTCGGAGCAGCGCGATGAACTGCTCAAATGTGGGAACCAGTGTcctaaaaatTACGCTTGCGGTCACAGGTGCATGAACGACTGCCACCCGGGCGTGTGCAAGGACGAGAACGAGTGCAGCAAGAAGGTGAAACTATTCTGCCCGTGCAAACGCGTGAAGAAGGACTTCGCGTGCTCGCTGGCGCAGAGGCAGAAGATCGAGGTGCCGTGCGACGACGTCTGCGCGAAACTGAAGAAGGAGAGGAGCCAAGCGGAGGCCGCGCTGCTCGCGCAGAAACGCCAGGCCGAGGAGATCCGCAATCAGGAGGAGATCGAGAAGTTCGAGAGGAAATTCAAGCCTCGTCGCAAAGGCAGGGACAAGCTCGACAAGAAACAGCTGCGCAAAGAGACCAATGGGAGTTATTGGAAATACTCGATTTTGACAATTCTAATAGGCGTCGTCGGCGTAGCGGTGTATTACATGACTGTTCAGAGAGTGTGA
- Protein Sequence
- MQKFRRAQAQNKIAINKHLEANAYLESSSEDEDDINTEDIQNVVGKVLSGYQGKEADAEKILSYLVNAFQSGSAVCLICISTIKKADAIWNCSKCFAFLHLSCILHWTRDSLNVKREKGVAPIWACPKCRMEYGQDEVPRNYKCFCRKVIDPAFQPWNIPHSCGDPCGKLLQPECGHKCVLLCHPGPCPPCAKTVSVKCFCGKQAPDQRRCNAKDWSCGTVCNKRYKSCSHTCKQLCHAGDCPPCPETLTLECHCKSNTGTRQCSEGAWSCDKPCRRPLSCNVHVCQSTCHLPGDCGPCILEKNRTCPCGKKRYAVSCSQEQLPTCGDTCGKLLDCGSHFCNMRCHADRCGQCLEVVTKSCRCDSYTKEVACAKEFHCNKKCVQMRLCGRHLCNKKCCDCLIKNTFNVCEKICENTLNCRKHKCSAPCHSGPCYPCERTDVIQCRCGYNKITVPCGTTKRVRPPPCNKPCKVPPICHHPKRETHKCHQGACPPCKKICDLTYKRCGHSCVAVCHTKVWVKVKKNDAKAQPTGPWEIQKETKQLKTLPCPPCEVSVPVTCLGGHETRPWPCHMARPTSCGRPCGRMLPCSNDTCELVCHKVSSPGDAANGTPCMECEKPCAFPRPQGCTHTCPKPCHPAPCSPCKQLVKIPCHCGIVTLYRRCAELTSATSEQRDELLKCGNQCPKNYACGHRCMNDCHPGVCKDENECSKKVKLFCPCKRVKKDFACSLAQRQKIEVPCDDVCAKLKKERSQAEAALLAQKRQAEEIRNQEEIEKFERKFKPRRKGRDKLDKKQLRKETNGSYWKYSILTILIGVVGVAVYYMTVQRV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00865697;
- 90% Identity
- -
- 80% Identity
- -