Nmel005250.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Nomia melanderi
Gene Symbol
-
Assembly
GCA_003710045.1
Location
NW:5725093-5732880[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 7.7 4.6e+02 0.7 1.1 2 11 330 339 329 349 0.79
2 16 0.0079 0.48 10.1 5.0 2 20 386 404 385 406 0.92
3 16 0.026 1.6 8.4 2.3 2 23 449 471 448 471 0.93
4 16 0.015 0.9 9.2 0.1 1 23 477 499 477 499 0.92
5 16 3.2e-06 0.0002 20.7 2.6 1 23 505 527 505 527 0.96
6 16 3.6e-05 0.0022 17.4 0.8 1 23 536 558 536 558 0.98
7 16 0.00012 0.0071 15.8 4.0 1 23 564 586 564 586 0.97
8 16 2.7e-06 0.00017 21.0 0.9 1 23 591 613 591 613 0.97
9 16 0.059 3.6 7.3 6.6 1 23 620 642 620 642 0.99
10 16 0.0016 0.098 12.2 0.4 2 23 662 683 661 683 0.95
11 16 0.0014 0.083 12.5 0.2 2 23 691 713 690 713 0.96
12 16 0.00014 0.0082 15.6 0.9 1 23 719 741 719 741 0.97
13 16 0.0002 0.012 15.1 3.2 1 23 747 769 747 769 0.98
14 16 5.7e-07 3.5e-05 23.1 1.5 1 23 775 797 775 797 0.98
15 16 7.8e-06 0.00047 19.5 2.0 1 23 803 825 803 825 0.97
16 16 2.4 1.5e+02 2.3 0.0 5 15 834 844 833 846 0.86

Sequence Information

Coding Sequence
atgagTATAGTTTGTGCTGcaagaaattgtaaatactcgttaaatgctgAAGATTCGTcacatgtaatttttattaattttccgaACAGCGATACgTCTAAAGTATGGGCTCACCATTGTGGCAGAACAGAccttataacaaaatctaatgaagaattacatttaaattattatatatgttcTCATCATATTGAAGaccattattatataaataaaactgatcCTATTCTAATAGACCAACATGCTATTCCTACATTGTTTGGACCAAATGTTCTAGCAGAAAAGAATGCTCAAAATATAGTTACTAGAAATGAACAAATAGAAGGAACAGACAATGTAGTACTATCGTATTGTGATATAGATGCTGAGATAGATCAGTATCGTGATATTAGTATTAGATTGTCAAATTTATGTAGAATTTGTGGAGAACAATCTTTGGATGGTTTAGAGATATTCACTGATAAAGGTatagaattgaaattaaaagagaaaatgaatttacatCTACCAATAATTCTTAATGTGGAAGACTTAATGCCACAGAAATTATGTactaattgttataataaacTGGAACTAGCACATTTATTAGTCATTACTTCTTTAAAAACTGATATGagattgaagaaatttttaaatatcaatgaagAATTAAGTTatgacaataaatataatgaaatagtaaAGAAGTGTTCTTTACAATTAGCAGAAGAAATGTATGCAAATGGAGCAGCTCAAATTACGTCTATGGAACTATCGTCTAATAAAGAagaagcaataataataaatcaagatAGTCAGGATATatctaaaaaattgaattacttaCAGAATATTGATTCTGAGAAAGCTAATTGCTCAAACAAtgtgaaaaaagaaatgcaaTCTGAATTAAACATACTTATTGAATCATTTAGtgagaaaaatgaagatatttCAACGGATAAAActgaacaaaatgaaataacaagTGGCATCAATGAAATTACATGTTTTCATtgcaaaaattcatttaaagctcacgaaatatttgaaaatcacaAAATGTTATGTGATAAAGAGGAAATTACAatacagaaacaaaaagaaattactaataatGTGATCGGTAATAAATCAGAAGAGGAAGTAATTAACTTTCAGTTTGATATAAAAAGCTGCAATATTTGTCATAAATGTTTTGacaatgaaaaacattttgCTGAGCATAGGTCTTCAAATTGTAAACCTTTTCTGGAAGAACATTACAAAATCGCAGGCAAATCAAATACAACTGAAAACGActacaatatttatgaaaatcctgacaatgtaaatattgttacaataatgcaaacgaataaaaaatgtgGTCATTGTCAGTCCATTTACAAtactaaaaaagaattattaaatcacATCACAGAATTTCATAAAGGTCAATTGTTATTTGCatgtattatttgtaataaaaattatgaaaaatggtCTAGCTTAGATGTTCATGAAGCTACTCACAGGGTAGATAAACCTTACTTGTGTGATCTCTGTGGAAAGAGTTTTAAACACTCCAATAATTTAAGAGGCCACAAAAGGATTCATTTAGATGATTCAAAGAAAAAACGGTATATCTGTGAAATTTGTGGAAATGCATTTAGATCTAGATTTCATTTGGGAGAACATATGAATCAACATAATGGACAAAAACCTTACTGTTGTGAAAAATGTGGAAAAgctttttataaaagaatacaaTTAAGACAACACAAATTGTCTCATGGTATGAATAAACACATTTGTCCAATATGTGGAGCATCATTTAACCGTAAAGGGAATATGAGTACACACCTTAAAAGGCATAATAATGAAAGTGGCACATACACATGTAGTGTCTGTGCTTGTAAATGTAAATCAATGAgtgaattgaaattacataGGAAAAAACATACAGAAGAGGATATTCTGGAAAGTATAAAGAAGAAATCTACTGATGGTATGAGATGGCAATGTAAAATTTGCAACCAGATATTTACAACGcgaacagttttcttaaatCATGAACTTATACATAAAGCACAAAAGGTGAACGTTGAATGTGATATTTGTGGTAAACAATTAGCAAGTAAGAATTCTTTAGTTTATCATAAAAAATCGATGCATTCTAAAGAAAAAGCACATATGTGTCAGTATTGCGGGGAATCGTTTGTTTCTAAAGAGGCGCGACTTATACATGAAAGGACACACACTGGAGAACGTCCgtatgtttgtaaaatatgtaaaatggaATATAAATGTTCCAGCAACCTTAATCAacatatgaaaattcatttggcCATTAAACCTCATAGATGTTCATATTGTAGTAAAAGTTTTACACGTAAGGGGGCATTAGCTGTTCACGTAAGAATCCATACTGGCGAGAAGCCATTTGCCTGCGAAACTTGCGGCAGAAAATTTTCGCAAAAGAACGATATGTTGAAGCATACAAAAACGCAtcgtacaaaaattttaaaacgcgaACAATGTGATGAagtttttacaagaaaaaagGATATACAGTGA
Protein Sequence
MSIVCAARNCKYSLNAEDSSHVIFINFPNSDTSKVWAHHCGRTDLITKSNEELHLNYYICSHHIEDHYYINKTDPILIDQHAIPTLFGPNVLAEKNAQNIVTRNEQIEGTDNVVLSYCDIDAEIDQYRDISIRLSNLCRICGEQSLDGLEIFTDKGIELKLKEKMNLHLPIILNVEDLMPQKLCTNCYNKLELAHLLVITSLKTDMRLKKFLNINEELSYDNKYNEIVKKCSLQLAEEMYANGAAQITSMELSSNKEEAIIINQDSQDISKKLNYLQNIDSEKANCSNNVKKEMQSELNILIESFSEKNEDISTDKTEQNEITSGINEITCFHCKNSFKAHEIFENHKMLCDKEEITIQKQKEITNNVIGNKSEEEVINFQFDIKSCNICHKCFDNEKHFAEHRSSNCKPFLEEHYKIAGKSNTTENDYNIYENPDNVNIVTIMQTNKKCGHCQSIYNTKKELLNHITEFHKGQLLFACIICNKNYEKWSSLDVHEATHRVDKPYLCDLCGKSFKHSNNLRGHKRIHLDDSKKKRYICEICGNAFRSRFHLGEHMNQHNGQKPYCCEKCGKAFYKRIQLRQHKLSHGMNKHICPICGASFNRKGNMSTHLKRHNNESGTYTCSVCACKCKSMSELKLHRKKHTEEDILESIKKKSTDGMRWQCKICNQIFTTRTVFLNHELIHKAQKVNVECDICGKQLASKNSLVYHKKSMHSKEKAHMCQYCGESFVSKEARLIHERTHTGERPYVCKICKMEYKCSSNLNQHMKIHLAIKPHRCSYCSKSFTRKGALAVHVRIHTGEKPFACETCGRKFSQKNDMLKHTKTHRTKILKREQCDEVFTRKKDIQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-