Nmel001508.1
Basic Information
- Insect
- Nomia melanderi
- Gene Symbol
- -
- Assembly
- GCA_003710045.1
- Location
- NW:1694314-1697303[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 2.3e-06 0.00014 21.2 2.4 2 23 106 129 105 129 0.92 2 18 0.0039 0.23 11.0 1.6 1 23 129 152 129 152 0.95 3 18 0.00049 0.03 13.9 0.6 1 23 160 183 160 183 0.97 4 18 0.00011 0.0064 16.0 2.0 1 23 189 212 189 212 0.95 5 18 0.00051 0.031 13.8 1.1 3 23 220 241 218 241 0.96 6 18 3.5e-05 0.0021 17.5 1.8 1 23 246 268 246 268 0.98 7 18 0.26 16 5.3 0.1 2 23 275 295 274 295 0.88 8 18 2.2e-07 1.3e-05 24.4 0.2 1 23 301 323 301 323 0.98 9 18 0.00057 0.034 13.7 0.4 1 23 329 351 329 351 0.97 10 18 1.3e-05 0.00077 18.9 1.6 2 23 461 484 460 484 0.91 11 18 0.00081 0.049 13.2 0.4 1 23 484 507 484 507 0.94 12 18 0.0009 0.055 13.0 1.1 1 23 516 539 516 539 0.96 13 18 0.00014 0.0082 15.6 3.6 1 23 545 568 545 568 0.97 14 18 0.00066 0.04 13.5 0.5 2 23 575 597 574 597 0.96 15 18 6e-06 0.00036 19.9 2.6 1 23 602 624 602 624 0.98 16 18 0.0014 0.085 12.4 0.1 2 23 633 653 632 653 0.97 17 18 7.1e-06 0.00043 19.6 0.5 1 23 659 681 659 681 0.96 18 18 1.1e-05 0.00065 19.1 0.1 1 23 687 709 687 709 0.98
Sequence Information
- Coding Sequence
- ATGTATCTACAACAGTACCTCAGTCAGAAATATCACGTATTAACAACATCGAACTTGATCTGTTTTAGCTCGCCGGCGGTGGATCCCCTAAAGGACGTCAACACAGCTGACGGACTCAATTCAGTGAAGATCAGGAACACCTATGCTTCCACGAACTACATCAGACCACCTAAAAAACGAACAGGTAGACCGATATCcacaaaaaataattcctgTTCCCGAACCTCTAAACCAAGAGTGACGAAACGCAAGACATCAGTATCGCCGAAGCCAGCGGAACCGAAGGCGGCAACGATGAGATCCATCGAGCCTTTGGAATGCGATCATTGTGGCAAAGAGTTCTACCGCAAAGCTCACTTGGTGATGCACATGAAGACGTACAAGCACCAATGCAACTCCTGCGATCGACTTTTCCGGCTGAAGAAAGATTTAAGCGTACACGTCAAAGAGAAACATGGACCAACGCAGATGGCGACGTACCCTTGCTCCCTCTGCGAGTACAAGAGCACCAACAAAGGTACCTTGAAGGACCACATAATTCGCAAACACACGAGCAGTTACCCTTACGCGTGTACAGTTTGCCAGAAGAAGTTCAAGCTGAAGAACGACCTGAAGCAACACACGAATCAGATGCACAACAATGCTCCAGCCGTGATATGTTCCGTTTGCGGTCATCCTTACAAGAGTATCCAAGCCCTGAAGCATCATATCAGGTACAGCCACAACAAACATCCCTTTGAGTGCAGCATATGCAAGCGTTGCCTGTCCACCGAGGAGAGTTTGAATCAACACATACTTCGCCACAAACAGAGGGAAAGGGTGGTGTGCCCGACGTGCGGGAAGATACTCAGGGGACGCACCATCGAGGGGCACATGCGGGTGCACACAGGGTTGAAGCCTTTTTCGTGTCCGGTTTGCGGGAAATCCTTCTCGAGGCAAACAGCCATGGAGCAACATCTTCTAATTCACACTGGAAAGAGACCGTACATTTGTGATATTTGCGGGCAAGCTTTCGCGCAGAAGCCGGGCTTGATTTGTCACAGGAAGAGACACCCTGGACCGCTGCCCCCTCTGGCTGCGGTTTCCGTAAAGAACATCGTGATGGAGTTTACCAAGGAGTACAATATGAAGAATGCGACTGTTAATAGCGATTCGCCAGTGGATCCCTTGAAGGACGTCAACGCCACGGAAGAATTCTACGCCATCAGAATCGAGTCCGTGTTCACCTTGGCGGACCAGCAGAAGCTGTCCGAGAATCAGGCGCAGGAAAGAATGATAAccgatttgaataatttcatggTCCCGGAACCTCAAGAGCCGAGGGACCAAATAGCGGATGCGTCGGAGCCGACGAAAATACACGCGAACAGCGGATCGTTGCAGTGCGACCGTTGCGGCAAACAGTTCTACCGCAAGGCGCACCTAGTGTTGCACATGAAATCCTACAAGCATCAATGCGTCGTCTGCGACGAGATGTTCCGACTGAAGCAGGACTTGAGGTTACACGCCAAAGAGAAGCACGGCCGGAACGATCACTCGAAGATGCACCAGTGTGTCCAATGCGACTACAAGACGCCAACGAAGGCGACGCTAAGGGATCACATCATCCGACAGCACACCTCGAACTTCGACTTCAAGTGTACGTTCTGCAGCAAGAAGTTCAACGTGAGGTACGACATGAGGCAGCACATGAAGCAAGTGCACGGCGAAACGCCGGCCATCAAGTGTTCCATGTGCAGCAATTCCTACAAGAATCTTCCGGCTCTTCAGAACCACATCAAGAGCACCCACGAGAAGTACCCTTACGAGTGTAAGCTGTGCAAACGTTGTTTGTCGACGCAGGAGAGTTTGGAGCAGCACATGCGCTGGCACGAGGAGAAGAAGAGCGAGAGCGTGACTTGCCCGATATGCAAGAAGGTCCTCCGAGGGCGTACGCTGGCGGCCCACATGCGAATGCACGCCGAGGAGAAGCCCTACATGTGCCCAGTTTGCGGCAAGTGCTTTCGGAGGATGAGTCCCATGGAGCGGCACGTCGTCATTCACACCGGGAAAAAGCCGTACGCTTGCGACGTTTGCGGGCAGAGGTTTGCGCAAAGGCCGGGGCTGCTGGCACACAGGAGGCGACATCCTGGGCCACTGCCCCCTCTGCCGGTAGTGTCGATTAAGAGCATAGTCAAGGAGTTCACCCAGGATATTGGGAAGAACGAAACCATTGAAATCGATTGA
- Protein Sequence
- MYLQQYLSQKYHVLTTSNLICFSSPAVDPLKDVNTADGLNSVKIRNTYASTNYIRPPKKRTGRPISTKNNSCSRTSKPRVTKRKTSVSPKPAEPKAATMRSIEPLECDHCGKEFYRKAHLVMHMKTYKHQCNSCDRLFRLKKDLSVHVKEKHGPTQMATYPCSLCEYKSTNKGTLKDHIIRKHTSSYPYACTVCQKKFKLKNDLKQHTNQMHNNAPAVICSVCGHPYKSIQALKHHIRYSHNKHPFECSICKRCLSTEESLNQHILRHKQRERVVCPTCGKILRGRTIEGHMRVHTGLKPFSCPVCGKSFSRQTAMEQHLLIHTGKRPYICDICGQAFAQKPGLICHRKRHPGPLPPLAAVSVKNIVMEFTKEYNMKNATVNSDSPVDPLKDVNATEEFYAIRIESVFTLADQQKLSENQAQERMITDLNNFMVPEPQEPRDQIADASEPTKIHANSGSLQCDRCGKQFYRKAHLVLHMKSYKHQCVVCDEMFRLKQDLRLHAKEKHGRNDHSKMHQCVQCDYKTPTKATLRDHIIRQHTSNFDFKCTFCSKKFNVRYDMRQHMKQVHGETPAIKCSMCSNSYKNLPALQNHIKSTHEKYPYECKLCKRCLSTQESLEQHMRWHEEKKSESVTCPICKKVLRGRTLAAHMRMHAEEKPYMCPVCGKCFRRMSPMERHVVIHTGKKPYACDVCGQRFAQRPGLLAHRRRHPGPLPPLPVVSIKSIVKEFTQDIGKNETIEID
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -