Basic Information

Insect: Nomada ruficornis
Gene Symbol: -
Assembly: GCA_951802695.1
Location: OX637851.1:9099165-9101557[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00062 0.064 14.2 0.9 2 23 230 252 229 252 0.95

2 10 0.032 3.3 8.8 3.7 1 23 256 278 256 278 0.98

3 10 0.00068 0.069 14.1 2.7 1 23 284 307 284 307 0.96

4 10 5.9e-05 0.0061 17.4 0.4 1 23 314 337 314 337 0.97

5 10 0.00025 0.026 15.4 2.0 1 23 372 395 372 395 0.96

6 10 0.75 77 4.5 0.2 5 20 408 423 407 425 0.91

7 10 0.02 2 9.5 3.7 1 23 432 454 432 454 0.92

8 10 2.1e-06 0.00022 22.0 2.2 1 23 458 480 458 480 0.96

9 10 1.5e-06 0.00015 22.4 1.4 1 23 486 508 486 508 0.98

10 10 6.1e-07 6.3e-05 23.7 1.1 1 23 514 536 514 536 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00062	0.064	14.2	0.9	2	23	230	252	229	252	0.95
2	10	0.032	3.3	8.8	3.7	1	23	256	278	256	278	0.98
3	10	0.00068	0.069	14.1	2.7	1	23	284	307	284	307	0.96
4	10	5.9e-05	0.0061	17.4	0.4	1	23	314	337	314	337	0.97
5	10	0.00025	0.026	15.4	2.0	1	23	372	395	372	395	0.96
6	10	0.75	77	4.5	0.2	5	20	408	423	407	425	0.91
7	10	0.02	2	9.5	3.7	1	23	432	454	432	454	0.92
8	10	2.1e-06	0.00022	22.0	2.2	1	23	458	480	458	480	0.96
9	10	1.5e-06	0.00015	22.4	1.4	1	23	486	508	486	508	0.98
10	10	6.1e-07	6.3e-05	23.7	1.1	1	23	514	536	514	536	0.99

Sequence Information

Coding Sequence: ATGATCCCGATGAAGAGGTCGTCGATTGCGGAAACGACTCGGGGCCAAGATAGAAATGACCGAGTGCCGTACAAAGTTGCTATTCCAGTGTCTAGCCTGGCTGCGCACAATTCGACGCCGTGGAAAATCGAGGTAGACTGTGACGACGGCGACGGTGAAAGAACAAAGGCGATCGTAAAAACCGAATTTGACCGGGACGTTCACCCGGGGAAAAGAGCAAACGACGAGACGGCGGTGGAATCGACGAAAACATTTCTGGTGCCTGTTCGGGATCCAGTGACGAGGCAGGTGAAAAGTATGTTGGTACCCGTTGAAGTGAAAGACGAGTCTGGCTTGAACATAATCAAGAGTGTGTTGATACCGGTCCACGGGGGCGATGGATTGGTGTCTTACGAGATCAAAAGGGTTGTGGTCCCGATCCACCCGGTACTGATCATATCTCAAAGGAAACAGAGCGATACCAGGCCGGGTACGAATAAAAACAAATGGAAGCAAACTAGTAATAAGAATACCAAAGAAACCGAGGAAAAGATGAAATTGAAAGCGGGGAGAAGGGAGAAGCGGCGGATAAAGAGGTCGGgagaagaagaggagagaaCGCCAGAAGGAACAGAGAAAAGTGTACCAGCCGAAGACGTTCCGAAGGGGGACGTGGATCAATTGCACATTCTGGACACCCTGCGCACAACTTGTCCCTTCTGCCAGAAACGTTACAGGAACGTGGACGAAATGCAGAAGCACGTTTCGAAAGTGCACAAGAAGCCCTACAATTGCGACAAGTGCTGCAAGGGTTTCTTCACCGAATACGCGCTCGAGGAGCATCGGAAAAAGCACGAGGTGACTTCTTTCTATCAGTGTTCCATCTGTCAGCTGCAGTACAAAACCACGAGCGGCCTGAAGAACCATCACACCCGAGCGCACAGTGATCTGAAACCAAACTTCATGTGCGACTACTGTGGGAAACGGTTCATACTGAAACTGGATCTGGTCCTCCACATCAATCGATCGCACATGAACACCACACATATATGCAGGTTCTGCGGTATGGCGGTGAAGAATATCTCGCATCACGAATTGAAGCACATACACGCGAGACAACCGACGCCACCCTCGTATTGCTGCGAACTCTGCCCGAGAACGTTCAAGGCGCGCAACAGCTTGGAAAATCATCTACTGATGAAGCACAATGGTTCGAAGGGGGGGCCCGACATGCTGCGAACGCTGTGCGAGAAACCGTTCGAATCGAGGAACGACTTTTATCAACACCTGCACAATCGTACAGAAGCCAGACAGCACAAGTGCGACGTCTGCGGAAAAATCTGCGCCAACGAGGAAAACCTTCGTTGCCACGTCACCCTGCACTCGCAGTCGTTCCTGTGCCCCCACTGCGGCAAGGTTTTCTCTACCAATTACTCGCGGAAGCTGCACCTCCGCGTGCACACAGGCGAACGACCGTATCAGTGCAAGGAGTGCCTTAAATCGTTCTCCAGAAGCACGTCGCTCACGGTGCACGAGCTAACCCACACGGGGCAGAGGCCGTACGTTTGTGATATATGCGGACAGAAATTCACACAGAGGAGCAGCATGATGGTGCATCGTCGGAAGCACCCTGGAAATCATCCACCACCTCCGCCCATGGCCCTGAGTAAACGGAAGAATAACGAGCATTAG
Protein Sequence: MIPMKRSSIAETTRGQDRNDRVPYKVAIPVSSLAAHNSTPWKIEVDCDDGDGERTKAIVKTEFDRDVHPGKRANDETAVESTKTFLVPVRDPVTRQVKSMLVPVEVKDESGLNIIKSVLIPVHGGDGLVSYEIKRVVVPIHPVLIISQRKQSDTRPGTNKNKWKQTSNKNTKETEEKMKLKAGRREKRRIKRSGEEEERTPEGTEKSVPAEDVPKGDVDQLHILDTLRTTCPFCQKRYRNVDEMQKHVSKVHKKPYNCDKCCKGFFTEYALEEHRKKHEVTSFYQCSICQLQYKTTSGLKNHHTRAHSDLKPNFMCDYCGKRFILKLDLVLHINRSHMNTTHICRFCGMAVKNISHHELKHIHARQPTPPSYCCELCPRTFKARNSLENHLLMKHNGSKGGPDMLRTLCEKPFESRNDFYQHLHNRTEARQHKCDVCGKICANEENLRCHVTLHSQSFLCPHCGKVFSTNYSRKLHLRVHTGERPYQCKECLKSFSRSTSLTVHELTHTGQRPYVCDICGQKFTQRSSMMVHRRKHPGNHPPPPPMALSKRKNNEH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01069870;
90% Identity: iTF_01069870;
80% Identity: -