Basic Information

Insect: Nomada ruficornis
Gene Symbol: -
Assembly: GCA_951802695.1
Location: OX637851.1:9083022-9084785[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00064 0.066 14.2 0.9 2 23 95 116 94 116 0.96

2 12 0.02 2 9.5 2.6 1 23 149 172 149 172 0.97

3 12 0.0028 0.28 12.2 3.2 1 23 207 230 207 230 0.93

4 12 0.037 3.8 8.6 6.9 2 23 305 326 305 326 0.97

5 12 0.028 2.9 9.0 5.2 1 23 335 358 335 358 0.97

6 12 0.074 7.6 7.7 3.5 1 23 373 396 373 396 0.95

7 12 3e-05 0.0031 18.3 1.3 1 23 402 425 402 425 0.95

8 12 0.013 1.4 10.0 0.8 3 23 432 453 430 453 0.94

9 12 0.00022 0.023 15.6 0.5 1 23 458 481 458 481 0.97

10 12 2.2e-08 2.3e-06 28.2 0.4 2 23 488 509 487 509 0.97

11 12 6.3e-08 6.5e-06 26.8 0.5 1 23 515 537 515 537 0.98

12 12 4e-07 4.1e-05 24.3 0.1 1 23 543 565 543 565 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00064	0.066	14.2	0.9	2	23	95	116	94	116	0.96
2	12	0.02	2	9.5	2.6	1	23	149	172	149	172	0.97
3	12	0.0028	0.28	12.2	3.2	1	23	207	230	207	230	0.93
4	12	0.037	3.8	8.6	6.9	2	23	305	326	305	326	0.97
5	12	0.028	2.9	9.0	5.2	1	23	335	358	335	358	0.97
6	12	0.074	7.6	7.7	3.5	1	23	373	396	373	396	0.95
7	12	3e-05	0.0031	18.3	1.3	1	23	402	425	402	425	0.95
8	12	0.013	1.4	10.0	0.8	3	23	432	453	430	453	0.94
9	12	0.00022	0.023	15.6	0.5	1	23	458	481	458	481	0.97
10	12	2.2e-08	2.3e-06	28.2	0.4	2	23	488	509	487	509	0.97
11	12	6.3e-08	6.5e-06	26.8	0.5	1	23	515	537	515	537	0.98
12	12	4e-07	4.1e-05	24.3	0.1	1	23	543	565	543	565	0.98

Sequence Information

Coding Sequence: ATGTGTTTTAGGATACCACTCAACAGCCAGAAAATCCTCACGGCGGATTCTTCCGGTCGATTCATAATTGGGAAAGACTCTGTTCCTATGCAGATTTGGCAGCACGTTGACAGCGACGGTAACTTGCACTACTCTTTGGTACCCGCATCAGACAACACCAGAAACCACGACGAAAGTTCCAAGACTCCTCTGAAATCGGGCAAGATCAAGGAGCAACACACCGACCTGAACAATCGTGCCAGTTCTCTGGTGTGCTCGCGCGAGGTGAAGATCGAGTTTTGCACCTGTGACAAATGTGGCGCGAGGTTCCCCATGGAGGGCATGCTGAACAGGCACAGAGTCACTCACAATTTGAACTCCTGGCTTCGAAGAAAGAAACTGAACACCGGGCGCCCGGTGAAAAGAGCCGTCAAACAGACGCAGAAATCGTCGGAGAAACGCAAATACAATTGTTCGTCCTGTGATTTCGGCTGCAACGTAAAGTCCACGTTGTCTGTCCACGTCAGGAAGAAACACAAGTTTCTCCCGCTGAAAGAAACTGCCAAGAGATCCTCCAGTACGATCAGCGGTTTAACCAGTTCGAGCAAGGAGGACCACGGAGACAGGAAGTCGACGATCTTCACCTGCAGCAGTTGCAATTTCGTGTGCAAAAGGAGCAGCACGCTAACTTCGCACGTGGCGCAGAACCATCAGATGTTCAACGACGAAGAAGCGTCCCCGTGGGAAGAAAGCCGGGCGATTAAGAGCAACGAGGAATCTCTGAAGCAAGAGACGTCAGTGGAAACCAGTTCGCCGGTTCGCAAGATAGATGTTTCTGTCCTTGCCCCGGCTCCGATCAGATTCGGATCCCAAAGTGTATCTTCCATGACCACTCGTGCAGGCAAGAAGCTGGAGAGTAAGCCTGCAGAGGAGCGGTGCAACCAGTGCGACTTCAAATGCTCGAAGAAGAGCACCCTGTACTCGCACAAGCGTCAGCACAAGGCCGCCGATATCAACGAGGTGTATTCCTGCAACGAGTGCGCGTTTAAAACCTGCAAAAAGTCGTCCCTGTACTCGCACATAAAGAGGAAGCATAAAATGGCGAAATCTTGTACGGCCGATGGCCAGCCCCAATTGTTTCACTGCAGCCAGTGCGACTACAAGAATAAGAACAAGTACGAATTGAAGGTGCACGTGGCCAGGAAGCACACGGACGATTTCAAATTCTCCTGCGAGACGTGCGGCAAGAAGTTCAAAGTGAAGGGCGACATGACGAACCATGTGCGATTCAGTCACAAGGAGCAGCCGGTTATCTGCGACGTTTGCGGTAAAACGTGCCTGAACAGCAATTCCCTGTACGTTCACCAGAAGTTCGCGCACTACAAGGCGAAGTACGAATGCCAGGTCTGCAAGAGGAGAATGGTGACCCAGGAGAACCTGAACGAGCACATGATCAGGCAGCACGAGAAGAGGGAAAACGTGGTCTGCGAGGAATGCGGTAAAACCTTCTCGAGGAACAGCAGGCTGAAGATTCATATGAGGATCCACACCGGCGACAAGCCGTACACCTGCACGATTTGCGGCAAATCGTTCGCGCGTAGAACAGCGTTGAAGCAACACCTGTTAATTCACACCGGCATCAGGCCTTACGTCTGCGACATCTGCGGGAAGGCGTTCACGCAGAAGCCCGGATTGATCAGCCACCGGAAATCTCATCCTGGTTCGCATCCTCCGCTCCCGAGGGTATTGATAGATCACATACTGAACGATGTGATGAACAATTGA
Protein Sequence: MCFRIPLNSQKILTADSSGRFIIGKDSVPMQIWQHVDSDGNLHYSLVPASDNTRNHDESSKTPLKSGKIKEQHTDLNNRASSLVCSREVKIEFCTCDKCGARFPMEGMLNRHRVTHNLNSWLRRKKLNTGRPVKRAVKQTQKSSEKRKYNCSSCDFGCNVKSTLSVHVRKKHKFLPLKETAKRSSSTISGLTSSSKEDHGDRKSTIFTCSSCNFVCKRSSTLTSHVAQNHQMFNDEEASPWEESRAIKSNEESLKQETSVETSSPVRKIDVSVLAPAPIRFGSQSVSSMTTRAGKKLESKPAEERCNQCDFKCSKKSTLYSHKRQHKAADINEVYSCNECAFKTCKKSSLYSHIKRKHKMAKSCTADGQPQLFHCSQCDYKNKNKYELKVHVARKHTDDFKFSCETCGKKFKVKGDMTNHVRFSHKEQPVICDVCGKTCLNSNSLYVHQKFAHYKAKYECQVCKRRMVTQENLNEHMIRQHEKRENVVCEECGKTFSRNSRLKIHMRIHTGDKPYTCTICGKSFARRTALKQHLLIHTGIRPYVCDICGKAFTQKPGLISHRKSHPGSHPPLPRVLIDHILNDVMNN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01065737; iTF_01068460; iTF_01069841; iTF_01066431; iTF_01067107; iTF_01067780; iTF_01069141;
90% Identity: iTF_01065737; iTF_01068460; iTF_01069841; iTF_01066431;
80% Identity: -