Basic Information

Insect: Nomada ruficornis
Gene Symbol: -
Assembly: GCA_951802695.1
Location: OX637851.1:9094366-9098203[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.0029 0.3 12.1 3.0 3 23 281 302 280 302 0.95

2 17 0.00032 0.033 15.1 1.6 1 23 306 328 306 328 0.96

3 17 0.0012 0.12 13.3 0.9 2 23 335 357 334 357 0.95

4 17 0.091 9.4 7.4 1.2 1 21 364 384 364 387 0.77

5 17 9.8 1e+03 1.0 0.0 1 10 392 401 392 406 0.80

6 17 9.2e-07 9.5e-05 23.1 3.8 1 23 422 444 422 444 0.98

7 17 4.6e-06 0.00048 20.9 1.0 1 23 448 471 448 471 0.95

8 17 0.087 9 7.4 5.5 3 23 477 497 476 497 0.98

9 17 5.2e-08 5.3e-06 27.0 1.7 1 23 503 525 503 525 0.99

10 17 0.013 1.4 10.0 0.4 2 23 666 688 666 688 0.92

11 17 0.012 1.3 10.1 2.9 1 23 692 714 692 714 0.97

12 17 0.0018 0.18 12.8 1.6 1 23 720 743 720 743 0.94

13 17 0.00033 0.034 15.1 6.2 1 23 750 773 750 773 0.97

14 17 3.6 3.7e+02 2.3 8.9 1 23 808 830 808 830 0.97

15 17 0.018 1.9 9.6 3.5 1 23 834 857 834 857 0.94

16 17 0.0016 0.16 12.9 0.6 5 23 867 885 864 885 0.92

17 17 4.2e-06 0.00043 21.0 1.4 1 23 891 913 891 913 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.0029	0.3	12.1	3.0	3	23	281	302	280	302	0.95
2	17	0.00032	0.033	15.1	1.6	1	23	306	328	306	328	0.96
3	17	0.0012	0.12	13.3	0.9	2	23	335	357	334	357	0.95
4	17	0.091	9.4	7.4	1.2	1	21	364	384	364	387	0.77
5	17	9.8	1e+03	1.0	0.0	1	10	392	401	392	406	0.80
6	17	9.2e-07	9.5e-05	23.1	3.8	1	23	422	444	422	444	0.98
7	17	4.6e-06	0.00048	20.9	1.0	1	23	448	471	448	471	0.95
8	17	0.087	9	7.4	5.5	3	23	477	497	476	497	0.98
9	17	5.2e-08	5.3e-06	27.0	1.7	1	23	503	525	503	525	0.99
10	17	0.013	1.4	10.0	0.4	2	23	666	688	666	688	0.92
11	17	0.012	1.3	10.1	2.9	1	23	692	714	692	714	0.97
12	17	0.0018	0.18	12.8	1.6	1	23	720	743	720	743	0.94
13	17	0.00033	0.034	15.1	6.2	1	23	750	773	750	773	0.97
14	17	3.6	3.7e+02	2.3	8.9	1	23	808	830	808	830	0.97
15	17	0.018	1.9	9.6	3.5	1	23	834	857	834	857	0.94
16	17	0.0016	0.16	12.9	0.6	5	23	867	885	864	885	0.92
17	17	4.2e-06	0.00043	21.0	1.4	1	23	891	913	891	913	0.98

Sequence Information

Coding Sequence: ATGTGCGGGCAACTCACTGCTACCTGCCAGGACAGGAATAATCGAGTGCCACACGACGCAAACAGTGTTCCAGTTGCTAATAAACGCGAGAACAGTGGGACACTTGAACAAATTGAACACAACGATTGCAAACTTTCTAACGAAACAGCGTTAACCGACAGAAGAAATAATGCAACCGATCCGTTAACTTTTACTGGAAGGACGACGCGACGCATACTTTCCCATGAGAAGATGATTCACAATCGTTACAACAATTTAATGTCGAAAGACATTTCCAACGTGTCAGCTGCGGCAGACACGACGGATTCATGCGCGAACCCAACGAAGACAGTCCTGGCGCCGATCAGAAATCCGCTGACGAACGAGATCACGAACACCTTGGTGCCGGTTGAAGTGCTGGACAATTCTGGCaccaatataattaaaaatgcgCTGACACCAGTCCGCGGTGAAAACGGTGGCACGTCGTACGATGTTAGAAGAGTTGTTGTGCCGATCAAGCCGGAATACAACTAtccacgaagaagaagaaccaGTAACAAATTAGCAACGAATACAGGACCGTCGATACAGGTGAAGATCGTATCGAATGAGGATGGACAAAGTGAACCGAGGGAAGACGCAAGGATGATTGTGTCGCCGGAAGAAACAGAAAGGATAATAGAAAGCATCGCGCAAGAGCCAACGGAAGAATCGTGTCAAGAGAAAGTATGCAACCCAATATATTCGTTCATTACGAAAACGATGGAAGTAGATGAAGACCGATCTCGAACAACACCTGAGACGGTAGAGCCGCCGAAGGAAGAGGTCGATCGAATATTGGATAACTTGAAGAACATCTGTCCGATTTGCCAGAAGTATTTCAAGAGCGAGAAGAAAATGCAGAGGCACGTGCACAGGTTTCACAACAAGACGCACAACTGTGACAAGTGCGACAGGAGGTATTACTCGAAAGCAGGCCTCGAGACGCACGTGAAAGTGCACCAAGACGATTTTTATTTGGAATGCTCTATCTGCCGTTTAAGGTACAAACGTAAGGCCGGGCTAAGGCACCACGTGATTCGTGCTCACAGTACAGCAGAGCCGAAGTACATTTGCGACTACTGCGGGAAGGGTTTCTATTTGAAGATGGACATTCGTTTTCACATCAAGTTCACCCATATGAATGTCACGCATATTTGTCGAATCTGCGGCAGGGCTGCGAAGAATATTAGGAATCACGAATACCTTCACGAGAGGAGGTTGAGAAAGATCAATTGCCAGTATCGCTGCCACCTGTGCAACAAACGATTCACCACCTCGAACAATTTGGAGAATCACTTGCTGATGCACAAGGACGGTTTCAAGTGCGACCGTTGCAACGAAGTTTTCTCGAGGCCGAGCGAACTCCTGAGGCATAAAAACTTGAAGCACAAGCCCGGCTCTTTGTGCACGATTTGCGACAAAATGTTCCATTGCAAAAGTAATTTCTATCAGCACGTGCTCACGCACGACGGTGTCAGGCCGTATAAGTGTGACATTTGCGGGGAAGATTTCACGCAAAGATCCAGCCTTTTCAGGCATCGACGGACGCATTCTGGACCGCTTCCACCTTTCATGGACATCGCTCATATCGCCGATATTGCGAAGAAGATTTTGTTGAAAAAAGAACCAGTCGCAGCACTGCTAAGAAATCCAAACAGAAATTCTCCTTACCATTTCATAGTTGTCGGCCTACGGAATAACGTCAACGACAAAGCGCCAAAACGAAGGTCCAAGAATAACGTCTCTTCGACGAATTCGCAACGCTCAGAGCAAGATCCGCTACAAGAGTCTCGAGAACGAAACTCCTACACCGGTCCCAATCACGATCCCGAACATCATCCCGATCCCGGACAAGACTCGAAGAAACCAAAAGCAGAAATTGAAGCCGCTTCGTCGACGAAAGAGGTGGACACGATCAATCCAAAGAAAGACGAGGCTGAGGTGGACCAAGTGTTAGACGAAATCAGGAACACCTGCCCCTTCTGTGAGAAGCGTTTCGACAGCGCGAAGAAGGTAGAAAACCACGTGACGTACGTGCACCGTCAACCTTACAAGTGCGACAGGTGCAAAAAGGCCTGTCACACTGCGCGAGCTTTGGAAGAGCACAAGATAATCCATCGGCCCGATTACTTCTTCGAGTGCGAGGTCTGCCGGGTGAAGTACAAAAGCGAGGACAGCTTGAAGAGGCACCACGTGCGGGTTCACAGCGACTACGAGTCGAAATACATTTGCGAGCACTGCGGGCGTTGCTACAAGTTGAAGATCGATCTGACCCATCACATAAAGCGAAGTCACATGTGGGAGCTGCAGATCTGCCGGTTCTGCGGCAAACAGGTGAGGCACGTGAAGGCGCACGAGTGGAAGCATCAGAGGCGGATCAAGGAGGCGGCGTACGAGCACACGTGCCACCTGTGCCGCAAGAAGTTCCTTCACAGAAGCCGACTGGACAGTCACCTGAAGCTGCACGAGAAGGGCTTCAGGTGCGAGGCGTGCGACAAGGAGTTCTGCGGGAATCGCGAACTAATGAGCCACAAGAAGTTCAAGCACGGCCACGGGAAAATTTCTACCTGCATACTGTGTCAAAAGACGTTCCCTTCCAGCAGTAATTATTATCAACACGTGTTAACCCATGCCGGCATCAGGCTGTACAAATGCGACGTCTGCGAAGAGGATTTCACGCAACGATCCAGTCTCATGAGACACAGGAAGAATCATCCTGGACCGCTGCCACCGTTGCCCCCGTCCCATCCGCAAATCGCTGAATTGGCCAAAAGCTATTTGGAGAAGATGCAAGGCGTTCAGATTGATAAGAGCTACGTGTTGAACGCGAGATTGTGA
Protein Sequence: MCGQLTATCQDRNNRVPHDANSVPVANKRENSGTLEQIEHNDCKLSNETALTDRRNNATDPLTFTGRTTRRILSHEKMIHNRYNNLMSKDISNVSAAADTTDSCANPTKTVLAPIRNPLTNEITNTLVPVEVLDNSGTNIIKNALTPVRGENGGTSYDVRRVVVPIKPEYNYPRRRRTSNKLATNTGPSIQVKIVSNEDGQSEPREDARMIVSPEETERIIESIAQEPTEESCQEKVCNPIYSFITKTMEVDEDRSRTTPETVEPPKEEVDRILDNLKNICPICQKYFKSEKKMQRHVHRFHNKTHNCDKCDRRYYSKAGLETHVKVHQDDFYLECSICRLRYKRKAGLRHHVIRAHSTAEPKYICDYCGKGFYLKMDIRFHIKFTHMNVTHICRICGRAAKNIRNHEYLHERRLRKINCQYRCHLCNKRFTTSNNLENHLLMHKDGFKCDRCNEVFSRPSELLRHKNLKHKPGSLCTICDKMFHCKSNFYQHVLTHDGVRPYKCDICGEDFTQRSSLFRHRRTHSGPLPPFMDIAHIADIAKKILLKKEPVAALLRNPNRNSPYHFIVVGLRNNVNDKAPKRRSKNNVSSTNSQRSEQDPLQESRERNSYTGPNHDPEHHPDPGQDSKKPKAEIEAASSTKEVDTINPKKDEAEVDQVLDEIRNTCPFCEKRFDSAKKVENHVTYVHRQPYKCDRCKKACHTARALEEHKIIHRPDYFFECEVCRVKYKSEDSLKRHHVRVHSDYESKYICEHCGRCYKLKIDLTHHIKRSHMWELQICRFCGKQVRHVKAHEWKHQRRIKEAAYEHTCHLCRKKFLHRSRLDSHLKLHEKGFRCEACDKEFCGNRELMSHKKFKHGHGKISTCILCQKTFPSSSNYYQHVLTHAGIRLYKCDVCEEDFTQRSSLMRHRKNHPGPLPPLPPSHPQIAELAKSYLEKMQGVQIDKSYVLNARL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01066439;
90% Identity: iTF_01068466;
80% Identity: -