Basic Information

Insect: Nomada ruficornis
Gene Symbol: -
Assembly: GCA_951802695.1
Location: OX637861.1:8211716-8214470[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.018 1.8 9.6 0.2 3 21 8 27 6 28 0.85

2 14 1.8 1.9e+02 3.3 0.0 2 20 34 52 33 54 0.90

3 14 0.95 98 4.2 0.4 1 12 236 247 236 256 0.89

4 14 0.014 1.4 10.0 3.1 1 23 367 389 367 389 0.97

5 14 0.00023 0.024 15.6 0.2 2 23 393 414 393 414 0.97

6 14 0.0011 0.12 13.4 4.9 1 23 425 447 425 447 0.97

7 14 0.036 3.7 8.7 0.1 1 23 466 487 466 487 0.76

8 14 0.00067 0.069 14.1 0.1 2 23 493 514 492 514 0.95

9 14 4.9e-05 0.005 17.7 4.8 1 23 543 565 543 565 0.99

10 14 2.1e-06 0.00022 22.0 3.7 1 23 571 593 571 593 0.96

11 14 0.0011 0.11 13.4 3.9 3 23 601 621 599 621 0.97

12 14 1.5e-06 0.00015 22.5 0.8 1 23 627 649 627 649 0.98

13 14 9.3e-05 0.0096 16.8 0.2 1 23 653 675 653 675 0.99

14 14 0.0004 0.041 14.8 0.2 1 23 683 705 683 705 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.018	1.8	9.6	0.2	3	21	8	27	6	28	0.85
2	14	1.8	1.9e+02	3.3	0.0	2	20	34	52	33	54	0.90
3	14	0.95	98	4.2	0.4	1	12	236	247	236	256	0.89
4	14	0.014	1.4	10.0	3.1	1	23	367	389	367	389	0.97
5	14	0.00023	0.024	15.6	0.2	2	23	393	414	393	414	0.97
6	14	0.0011	0.12	13.4	4.9	1	23	425	447	425	447	0.97
7	14	0.036	3.7	8.7	0.1	1	23	466	487	466	487	0.76
8	14	0.00067	0.069	14.1	0.1	2	23	493	514	492	514	0.95
9	14	4.9e-05	0.005	17.7	4.8	1	23	543	565	543	565	0.99
10	14	2.1e-06	0.00022	22.0	3.7	1	23	571	593	571	593	0.96
11	14	0.0011	0.11	13.4	3.9	3	23	601	621	599	621	0.97
12	14	1.5e-06	0.00015	22.5	0.8	1	23	627	649	627	649	0.98
13	14	9.3e-05	0.0096	16.8	0.2	1	23	653	675	653	675	0.99
14	14	0.0004	0.041	14.8	0.2	1	23	683	705	683	705	0.97

Sequence Information

Coding Sequence: atGGGATCGTTGAATCTCGTTTGTCCAATGTGCTGTGGTGAAACATTTAACAATCCACAGTCATTAAAGTATCATTTATTAAGCATGACGGATAACCTGTACTGTCCCGGTTGTTCGCAACGATCTGACTCAGTAATGGCTCTCATTCAACATTTGGATCGGTGTGGACAGACCGTCGAATCGGAGGCATCGTCTGACTCCAAACACGAACCGGAGCAAGAGGCTCAACATGAATCGGAACCAGACACGGAGGTGCTAATGAGCACAAATGTTGAGGGGATAGATCAAAGCTTCTTAGCGACTGTGAACGACAGTGGAATTATGATAGTCGGGGGACCTCAAACCATTCAAGTCGATGAGAATGGAGACATTAAAGTCGTGGAAAAGATGGAAACAGAAGATGTACAAATGGAGCAAAATTCTTTGGAATTTAAGATATCGGAAAAAGTTCCTAATGCTAGTAGCAAAGAAGACGAGAAATCTTTATCCCAGGATCAGCTAGTGACAATTTCAACCGTGTCAGAAGAAGATGataaaaatcgaaataaaaatgttattactATTTTGCCCGATGGATCGGAACTCCTTGATGGCGACACTGGAGCCCTGATAAATATGGATCATATAAATGATGTAGGTGAACTAGACGAAGATGGACTGTTACACGTAAAACAAGAACTCTGCGAGATAGAACCAGAAGCAGTTTATAGTTGTACTAGTTGCGACATGAGCTTCAATTCTGTTGTGGAGCACATAAAACAGTTTCACGATGGACAAGAAGTATTACTTGAAATAGCTGATCAATTAGATGATATACCTACAGTACCTGCAACCAACACCCTAACATCAGAGTCAGGAAGTGGAGCTAACAGCCGGCAAAGGCAGAGTATGAATACTCTTCGTACAGAAGAATGTGTTGACAGTGAGGGGAGATTATATACGAGAAAAGTAGTACAAATAGAAAGATTCTGGGACCGAACTCCAGCTCAGACGTCGCTTCAATCTACTAAGGCACCGATGATTGAAAAATTTTTTTCCAACGTGGAAGGAGTAAAAGTACGGGAGAAAAGATTGGCAGCGGCAGCACCAATGAGAATGTACAGATGTAATCAGTGCCTTCAGCAGTTCTCGAAATTAGGCAACTTCCGAGTACACGCGTGTCTTCATGGAAGTAATCGTTGTGATAGCTGCGACCAGACTTTCGCAACGCCAAAGGCATTACAGCTTCATGCAAAGGTTCACGAAGGTGAACCTGATCCGAATCAAAAGACTTTCATATGCGAAACCTGTGGTACGGAGTTTTGTTCGCACAAAAGTCTACGCTTGCATTCTCGAATGCATGCTCCAGTTAGGGCTAGGCATGTTGACGCACCGGAGGGAACACCAAATGCAACGTTTACATGTCCCGAATGCgGTAAAACATTAGCCGAATCGTACAAAGAAGCGCACATGGCATTGCACTCCGGTGAATCTGTAACTTGTACAGTATGCAATAGAAAATTCGATTCTGCCGATAGTTTAGCGATGCACGCTGCCGTACATATAGAAATAAGTCAACCACATTCACCTACACAACCAGCTACAGAAACTACCACAAATGCTGACCTCAACGAGAATCAAAAGCCTTATCAGTGTCAACACTGCGGACGAAGATTTACAAGACCTCACGAGAAAGTAAAACACGAACGTATTCATACCGGAGAAAAACCTCATGCATGCGAAGTTTGTGGCAAAACTTTTCGAGTTTCTTATTGCCTAACATTGCACATGAGAACTCATACTGGCGTTAGACCATACGGATGTCAACATTGTGGAAAGAGATTCAAGGCTTCTTCCGTTTACAATCATCATTTACTCACACACGGAGATGAACGCGCTTACACGTGCCCGTACTGTCCAAAAACATTTAAAACGCGCGTTCAATTGGCAGGGCATAAGAATAGTCATACTAAACCATTTCGATGTACCGAGTGTTCACGACCTTTTGCTTCATTGTATGCCGCCCGAGCTCACATACAAACTCATAAGAAGGACAATAATTTAAAGTTCAGTTGCTATATTTGTGGTGCATCCTACGGGAGAGCGTTTGCCTTGAAAGATCATTTAAAACAACACGGCCAAGATGTGCTAGCACCACCAGAGCCGGTaagggaagaagaaattcATGAAGGTGAAGAGTTTCTGCTCGCAGAGGAAGAAGTTGAGGACGACGAATTAGCTATTCCATCGCCATTACCCGTCGCTCAATCATCGGAAGCTGATGACACTGAATGA
Protein Sequence: MGSLNLVCPMCCGETFNNPQSLKYHLLSMTDNLYCPGCSQRSDSVMALIQHLDRCGQTVESEASSDSKHEPEQEAQHESEPDTEVLMSTNVEGIDQSFLATVNDSGIMIVGGPQTIQVDENGDIKVVEKMETEDVQMEQNSLEFKISEKVPNASSKEDEKSLSQDQLVTISTVSEEDDKNRNKNVITILPDGSELLDGDTGALINMDHINDVGELDEDGLLHVKQELCEIEPEAVYSCTSCDMSFNSVVEHIKQFHDGQEVLLEIADQLDDIPTVPATNTLTSESGSGANSRQRQSMNTLRTEECVDSEGRLYTRKVVQIERFWDRTPAQTSLQSTKAPMIEKFFSNVEGVKVREKRLAAAAPMRMYRCNQCLQQFSKLGNFRVHACLHGSNRCDSCDQTFATPKALQLHAKVHEGEPDPNQKTFICETCGTEFCSHKSLRLHSRMHAPVRARHVDAPEGTPNATFTCPECGKTLAESYKEAHMALHSGESVTCTVCNRKFDSADSLAMHAAVHIEISQPHSPTQPATETTTNADLNENQKPYQCQHCGRRFTRPHEKVKHERIHTGEKPHACEVCGKTFRVSYCLTLHMRTHTGVRPYGCQHCGKRFKASSVYNHHLLTHGDERAYTCPYCPKTFKTRVQLAGHKNSHTKPFRCTECSRPFASLYAARAHIQTHKKDNNLKFSCYICGASYGRAFALKDHLKQHGQDVLAPPEPVREEEIHEGEEFLLAEEEVEDDELAIPSPLPVAQSSEADDTE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00625657;
90% Identity: iTF_00226756;
80% Identity: -