Nruf017823.1
Basic Information
- Insect
- Nomada ruficornis
- Gene Symbol
- Sry-delta
- Assembly
- GCA_951802695.1
- Location
- OX637857.1:12614827-12616334[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 4 5.6e+03 -2.4 0.1 35 43 66 74 64 75 0.83 2 3 1.5e-09 2.2e-06 27.8 0.1 4 38 79 112 78 117 0.90 3 3 6.7 9.4e+03 -3.1 0.0 30 38 140 148 140 151 0.84
Sequence Information
- Coding Sequence
- ATGCACTTTTCAGCCCCGCTGTCGCAGCATTGCCACTTTGCGCCGTTTCTATTCCAGAAAAATGACGATCTTTTCTCTTTCACGGGCAAGAGTAGTACCTGCCGAAGTGGGTACAAGGAATTTCGTTTGAATGGGAATTGCTCGGCATCGGGCGTACCCTTGGCAGTAGGACGGTTTATCAAAGGCGGAAGACCGAGGTATTTCAGAAGAGGTTACGAGAAACAAGAAATCGAGCACATAAAATTGGCCGTCGAAGCAGTGGCCAATGGACTATCGTTGAGGAAAGCAGCCAAAATGTTCTGCATGTCCAAGTCTGTTCTTCACCGTTACAGCAAATCGGAGCAACGTTCGGCGGGCTACCTGAACTGCCAGAGAGTCACCTACCCGTGCAAGAACTGTGGCAAAGTGTACAATTACTACTCCAGCTTGGCCAGGCATTTGAAGCACGAGTGCGGCGTGGAACCAAAGTTCCACTGTCCCCTCTGCCCTTACAGAACGAAGCACAAGTCCAGCTTGAACACTCACCTCAACGGCAGGCATATGAAGCTCCTGAGCGAATTCTACGCGATGCCGAACGGAAACAAGCTGTCCCCATCCATGGATACCGGCAATTAA
- Protein Sequence
- MHFSAPLSQHCHFAPFLFQKNDDLFSFTGKSSTCRSGYKEFRLNGNCSASGVPLAVGRFIKGGRPRYFRRGYEKQEIEHIKLAVEAVANGLSLRKAAKMFCMSKSVLHRYSKSEQRSAGYLNCQRVTYPCKNCGKVYNYYSSLARHLKHECGVEPKFHCPLCPYRTKHKSSLNTHLNGRHMKLLSEFYAMPNGNKLSPSMDTGN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01070677;
- 90% Identity
- iTF_01070677;
- 80% Identity
- iTF_01070677;