Basic Information

Insect: Nomada lathburiana
Gene Symbol: Prdm15
Assembly: GCA_963667235.1
Location: OY763905.1:13342327-13344991[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 1.4e-06 0.0001 22.5 1.3 1 23 251 273 251 273 0.98

2 12 0.0016 0.12 12.9 3.9 1 23 278 300 278 300 0.97

3 12 0.00082 0.063 13.8 1.4 3 23 311 331 310 331 0.98

4 12 5.2e-05 0.004 17.6 6.2 1 23 424 446 424 446 0.98

5 12 0.0034 0.26 11.8 2.8 1 23 451 475 451 475 0.90

6 12 7.4e-06 0.00057 20.2 0.6 1 23 514 537 514 537 0.92

7 12 2.9e-07 2.2e-05 24.6 1.1 1 23 570 592 570 592 0.99

8 12 0.00017 0.013 16.0 4.0 1 23 606 628 606 628 0.96

9 12 0.00016 0.012 16.0 4.7 1 23 634 656 634 656 0.98

10 12 0.0014 0.11 13.1 3.2 1 23 662 684 662 684 0.98

11 12 9.8e-05 0.0075 16.7 6.6 1 23 690 712 690 712 0.97

12 12 0.00067 0.052 14.0 0.4 1 21 718 738 718 739 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	1.4e-06	0.0001	22.5	1.3	1	23	251	273	251	273	0.98
2	12	0.0016	0.12	12.9	3.9	1	23	278	300	278	300	0.97
3	12	0.00082	0.063	13.8	1.4	3	23	311	331	310	331	0.98
4	12	5.2e-05	0.004	17.6	6.2	1	23	424	446	424	446	0.98
5	12	0.0034	0.26	11.8	2.8	1	23	451	475	451	475	0.90
6	12	7.4e-06	0.00057	20.2	0.6	1	23	514	537	514	537	0.92
7	12	2.9e-07	2.2e-05	24.6	1.1	1	23	570	592	570	592	0.99
8	12	0.00017	0.013	16.0	4.0	1	23	606	628	606	628	0.96
9	12	0.00016	0.012	16.0	4.7	1	23	634	656	634	656	0.98
10	12	0.0014	0.11	13.1	3.2	1	23	662	684	662	684	0.98
11	12	9.8e-05	0.0075	16.7	6.6	1	23	690	712	690	712	0.97
12	12	0.00067	0.052	14.0	0.4	1	21	718	738	718	739	0.93

Sequence Information

Coding Sequence: ATggaaatcgaaaataaaacagaaatttcaTCAAATGTGCGTGACAATGTTTGCCGCGTTTGTCTCGCAAAGAATCGAAATAACCAATGCATTTTTGGGATCAAACAAAATGATCCGAATAAGAGAGAAACAATTGATTTGTCTGAGAAACTCCGTTTGTGTAGCGGTATTGAGATATTGGAGAACGATGGCTTACCCTCCACTATTTGTATAAAATGCATATCTAAGATCAATAATGCTCATGAATTGAGAAAGCAATGTCAGGATTCTGATATTCGATTAAGAGAATTGTATGGAAAGGTGGAAAGGATATATAACATAAATCTATGTAAGATTACGAAAGATCAGTACTGTCAGACTGATTATTCCTTCACCTGTGAtttaatcaaagtagaaaCTGATACATTTTCTGCAATGGGTTGTAATCCTTATCCAACGATAAATCTAAACTCCACCAGAAAGGATCAAAAATCTGAGGATacagaaggagaagaagaagatgaggAAGAATTTGGTAGTAGCTTGATTGAACATAATACTCCTATTAAATCTAAGCAAAGGGGATGCGAAAAGAACATCACAGGAAGGGAAGTCTATCGGACAAGGAGAATGACAATGTTTAAAAGAGTAACATCTATAGAAAATTTAAGAAATCATAAAGAAAGGCAAAGACAGTACATAAAAAAGAATGGGAATATCAAGCGAGATGATGAGTTAACATGTATTAAAGAAACAGATTCACAAAGTTCTTACTCATGTCCCAAATGTGGTAGGTTTTATTCCAGCAAAAGATCTTTAGATAGGCATATATTAACGCATGGTGAGAAAAAGTTTACCTGCGAGAAGTgtgacaaacatttttttcaacttGATAAGTTGGTACAGCACAGCAAATTGCACACAGTTAAAGAAAAGTCTAAACCTGtattatgtaaaatatgtaACAGAAATTTCAGAAAAACCGATACTATGGTAAGAcatttaaatgttcataaaaaAAGTAATCCTAAGGAAGTGCTCTCCATTTTGAAGGAAATTAGAGATAGAAGAAAGTTGGAAAACATCACGAATCCTCGTGAAGAAATGTCTGAGAGTGAAAGTTGTACCGAGGGCAACAAAATAGGCGAAAAATTTGCAGCTAATCAAAAGATGCACATAGACATTCACAGAAAAAATGTGTCTGTGTCCAAAAGGAAAGAATCGCATTGCAATTTATCATCCTGTAATGTTGGCACTGAGAAACTCGATTTACACGATCATGAATCGCGTCATcgttgtaaatattgtaacaaaTGTTATGCAAATGAAAGATCGCTTCAAAAACATTTACAGATTcatattgaaaagaaatttgtttgtaatGTATGTAACATGAAATTTTTCCGACAGGATAGACTAAACAGCCATAAAAATCGATATAGACACGACGAGGATACAACATCGATCGATGTACAAAAACCATCCGACGAAAAATCAGCtattaaattgattaacaGCTGGATCAGGGAAGAACTTGACTCGGACAATGAAGAGAAAGGCTTCCCTTGTAAAATTTGTGGAAAATCATATGATACGAAAAAATCTTTATTAAAACATAAATTGGGCGCACATAATTCGGAGGAAGAAAACTGTTTCAGCTGCGGCAAAATGTGCACTtgcaatgaaaaagaaaaggaacaacCGAAATCAAGTGAAATTCTAAAACCATATCGATGCGACGAATGCACGAAATCCTTTGAGAATGAAGTTAAGTTACAGAAGCATATGAGAATTCACGAACGGGCTAAGGAACAGCAGGATGTGAATTTTAAGCGATTTTTATGTCATATATGTAGCAAGACTTTTAGGCAAAATACAGGCCTCATGTTTCATATGAGAACGCATACTGGATACAAACCTCACGTCTGCAAATATTGTGGAAGAGGATTCACATCGAATTCTAACTGTATCAATCATGAAAGGACACACACTGGCGATAGACCATTCGTTTGTCATTTCTGTAGTGCTGCTTTTGCAAAATCATGTACTCTTAAAGCACACATTACGACGCATACAGGAGAAGCAAATTACCATTGTAAAACTTGTGGCAAGTCATTTAGAAGATTAAAGTACTTAAAGGAACACAAGTTCACGCATACAGGGGAAAAGCCGTATGCTTGTAAACTCTGTGGCACAGCCTACAGCCACTCGGGCAGTTTATTCGTGcatgaaaagaaatgtaaagCACAATATAATACCTATCAATCTAACTCATCGCAAACTGTGCAAAATTATTGTGAATCTGAAACGTCTTCACCAAGCGCTACCCCTATCATCACGGTTCTACCACATCTGAATAATGCCTCTACAATGGACACCCAAAATAGCAAAACTTATATTGATAATATTCAGAGAATGAATTCTCAAAGTATTGgtgttataaataatgttaatgCGTCGGATCTACATATTCATCCGAATTCGGATATTTCTGATGTTTCTTTAGCTGTAAAAAGCTTTGCACTTATTGGTCAAATGTTTCAATCGTAG
Protein Sequence: MEIENKTEISSNVRDNVCRVCLAKNRNNQCIFGIKQNDPNKRETIDLSEKLRLCSGIEILENDGLPSTICIKCISKINNAHELRKQCQDSDIRLRELYGKVERIYNINLCKITKDQYCQTDYSFTCDLIKVETDTFSAMGCNPYPTINLNSTRKDQKSEDTEGEEEDEEEFGSSLIEHNTPIKSKQRGCEKNITGREVYRTRRMTMFKRVTSIENLRNHKERQRQYIKKNGNIKRDDELTCIKETDSQSSYSCPKCGRFYSSKRSLDRHILTHGEKKFTCEKCDKHFFQLDKLVQHSKLHTVKEKSKPVLCKICNRNFRKTDTMVRHLNVHKKSNPKEVLSILKEIRDRRKLENITNPREEMSESESCTEGNKIGEKFAANQKMHIDIHRKNVSVSKRKESHCNLSSCNVGTEKLDLHDHESRHRCKYCNKCYANERSLQKHLQIHIEKKFVCNVCNMKFFRQDRLNSHKNRYRHDEDTTSIDVQKPSDEKSAIKLINSWIREELDSDNEEKGFPCKICGKSYDTKKSLLKHKLGAHNSEEENCFSCGKMCTCNEKEKEQPKSSEILKPYRCDECTKSFENEVKLQKHMRIHERAKEQQDVNFKRFLCHICSKTFRQNTGLMFHMRTHTGYKPHVCKYCGRGFTSNSNCINHERTHTGDRPFVCHFCSAAFAKSCTLKAHITTHTGEANYHCKTCGKSFRRLKYLKEHKFTHTGEKPYACKLCGTAYSHSGSLFVHEKKCKAQYNTYQSNSSQTVQNYCESETSSPSATPIITVLPHLNNASTMDTQNSKTYIDNIQRMNSQSIGVINNVNASDLHIHPNSDISDVSLAVKSFALIGQMFQS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01070544;
90% Identity: iTF_01066444;
80% Identity: -