Nlat011321.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Nomada lathburiana
Gene Symbol
-
Assembly
GCA_963667235.1
Location
OY763906.1:11858833-11861251[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 4.5e-06 0.00034 20.9 3.3 2 23 281 302 280 302 0.97
2 15 0.00083 0.064 13.8 3.9 1 23 308 331 308 331 0.97
3 15 1.7e-05 0.0013 19.1 1.1 3 23 411 431 409 431 0.97
4 15 5.7e-06 0.00044 20.6 1.8 1 23 437 459 437 459 0.97
5 15 0.00071 0.055 14.0 0.2 1 23 465 487 465 487 0.97
6 15 2.6e-07 2e-05 24.8 0.9 1 23 502 524 502 524 0.98
7 15 2.7e-06 0.00021 21.6 0.5 1 23 530 552 530 552 0.97
8 15 8.5e-06 0.00065 20.0 2.3 1 23 558 580 558 580 0.98
9 15 0.00075 0.058 13.9 0.2 1 23 586 608 586 608 0.99
10 15 3.3e-06 0.00026 21.3 0.3 1 23 614 637 614 637 0.94
11 15 1.7e-05 0.0013 19.1 1.3 1 23 643 665 643 665 0.98
12 15 0.00037 0.029 14.9 4.7 1 23 671 693 671 693 0.98
13 15 3.8e-06 0.00029 21.1 0.2 1 23 699 722 699 722 0.96
14 15 0.00036 0.027 14.9 0.3 1 23 728 750 728 750 0.94
15 15 3.3e-06 0.00025 21.3 4.5 1 23 756 778 756 778 0.99

Sequence Information

Coding Sequence
ATGAATTCATATATCAATTGTGAAAAGGAAAGACTGTATCATAGAGGACAAATTGATGTAATTGATATGCCAgtgcaattaaattgtaattacaaatatttttttgtttacgaGGATCAAGTATCCAGATTTGTTGTATTGAAAGGTTTGCATGGGAATGCAGCAAGTGAAGTAGCTATAAAACTTTTAGACGTATTAGCTATTATTGGAGCCCCACAGGTTTTACAAAGTAGTAACGGACGTGGGTTCGCGGAAGAAGTTGTACAGGAATTACGGTTTTTATGGAAAGATTACATTATACTTCACGGGGAAATCTCTGAAGGTGAGAAGAGTAGAGATTTTAAGAATTTACTTGAACATTGGATAGAAATGAATCCAACCACAACATGGTATGAAGCATTGAAACATATTCAAATTTTCCAAAATTCAACCTTTCGTTGTGATAATGGAAGGATTCCATACGAGGTATTGTTTGGTAAAAATGTTCACGAAGAATTTCAAAAACAAACTAATAGTATAGATTCAAGGGAAATCAtatggaaagaagaagaatggaTTAGTCTTATGCCCAATAATATGAGCAAGTCTAAAGAGAAAGGTAGTGAACGCCTTACAAAGGACTCAACCAATTTGACTGGCGTAAAGGATTTGGTCGGTCTAAAAGAATACGAGAGTGACTCTTCCGGCGAAGATAGAGACGGGGTGCAAACAGATGCCCCAGattttaaatttgtaaatgtaaAAAGTGAACCTTTAAACGTACATACAGAAGATTCAGTATTTGAGGATGAATCAATGATAGCTGATAAAACATTGTCCATAGGAGATCTAACTGATTTAAAGTGCAAAATCTGCAATAAACAGTACATGAAACCTGGGCATTTGAAAAATCATATGAGAACGCACACAAGGGGAAAGAAATTTGAGTGTAAATTATGCAATAAAACGTTTCATGTTCTAAGCTTGTATGAGAAGCACACACGTCAATCTCACCGtcaaaataaattatctaGCTTGagtagaaaaaggaaaagtaaaGATTCGCAGGATGAAACGACGGTAGATGCAAAAGCAGTTAAATTAAGTTCCTCGTCGGATTTCAATCACGACGATACACTACCAAATGTAGACAACGATAGTCCGAAAGCAAAAAGGAGTCTTAttaaagaacgaaagaaaggatCTGCAGACAATCGTTCAATGAAACTAAATGGAGATTCAACTCTAGATTGTTCGTACTGTAACCAAAAGTTTAACTTTCCTAGTGTATTAAAAAGGCATATTCGATCGCACACAAACGAAAGGCCATACATCtgtgaaatttgtaataaaagttTCAAACAATTGGGCCATCTTAGTCAACATTCATTGACGCACAAGGATTGTCGTTCATTCCATTGTGCAGTGTGTGGAGTAAAGTTTGACACATTGGGTGCTCTAAAAGTCCACGCTCAGTCACACAAAGAGGATTATATTTCCAAAACTAAAGCTGCTTTTCGTCTATTCGAATGTGACAATTGTAAAAAGGTATTCACCACTAAAAGCGTTTTGGAACGGCACATCCTCACTCACTCCCATGAACGTCAGTTCGCATGCGTAATTTGTGGGAAGAGATTCAAGCAAGCAGGACACGTAAAATCTCATATGCTTGTGCATACTggtgaacgaaaatttgaGTGCACGGTCTGCAAGAAAAGATTTAGCCTATCGAATTCTTTGAAAAAGCACATGTACGTCCATAATGGACAAAAGCCGTATCAATGCGATGTATGCGGGGCACGGTTTCTTGAAAAGAGAAATCTAAATGGACATCTCATGACTCACACGAATGAACGTCCGTTTCGCTGTAAGATTTGTGGCAAGCGATACACTTTAGCGGATACTTTACGCCGGCATATAAGTGCTGCTCACGAAGATGGGCGTACGTATCAATGCGAAATTTGTGCGAAAATGTTCAAACAGCTTGCCCATCTATCTGTACACAAGAAAGTACATAATGATGAACGACCATTCCAATGCCATTTATGCGAAAAGAACTTCAAGCATAAGAACGTGCTTAAATCTCATTTGGCTATTCACGCAAATGTGAGGCCGTTCGAATGCGATGAATGCAAGGCTACATTTGTAAGAAAAACTAATTTGCAAACGCATATCGCATCCGCTCATATGAATGAAAGACCATATGTTTGTATTATTTGCGGGAAACGATTTAAACAGATTAGCCACTTAAATGGACACGTCGTAGTGCACAGTAATTTAATGCCTTATCAATGCGATTTCTGTGATCGGCGATGTAATCGGCTCGACAATTTGAAGAAACATATGCGTCTTCAcacaaaaaataaagaatga
Protein Sequence
MNSYINCEKERLYHRGQIDVIDMPVQLNCNYKYFFVYEDQVSRFVVLKGLHGNAASEVAIKLLDVLAIIGAPQVLQSSNGRGFAEEVVQELRFLWKDYIILHGEISEGEKSRDFKNLLEHWIEMNPTTTWYEALKHIQIFQNSTFRCDNGRIPYEVLFGKNVHEEFQKQTNSIDSREIIWKEEEWISLMPNNMSKSKEKGSERLTKDSTNLTGVKDLVGLKEYESDSSGEDRDGVQTDAPDFKFVNVKSEPLNVHTEDSVFEDESMIADKTLSIGDLTDLKCKICNKQYMKPGHLKNHMRTHTRGKKFECKLCNKTFHVLSLYEKHTRQSHRQNKLSSLSRKRKSKDSQDETTVDAKAVKLSSSSDFNHDDTLPNVDNDSPKAKRSLIKERKKGSADNRSMKLNGDSTLDCSYCNQKFNFPSVLKRHIRSHTNERPYICEICNKSFKQLGHLSQHSLTHKDCRSFHCAVCGVKFDTLGALKVHAQSHKEDYISKTKAAFRLFECDNCKKVFTTKSVLERHILTHSHERQFACVICGKRFKQAGHVKSHMLVHTGERKFECTVCKKRFSLSNSLKKHMYVHNGQKPYQCDVCGARFLEKRNLNGHLMTHTNERPFRCKICGKRYTLADTLRRHISAAHEDGRTYQCEICAKMFKQLAHLSVHKKVHNDERPFQCHLCEKNFKHKNVLKSHLAIHANVRPFECDECKATFVRKTNLQTHIASAHMNERPYVCIICGKRFKQISHLNGHVVVHSNLMPYQCDFCDRRCNRLDNLKKHMRLHTKNKE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00684907;
90% Identity
iTF_01067748;
80% Identity
-