Nhir012930.1
Basic Information
- Insect
- Nomada hirtipes
- Gene Symbol
- -
- Assembly
- GCA_951802735.1
- Location
- OX637924.1:5172984-5173286[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.1e-07 0.0001 22.4 0.0 4 40 14 50 11 53 0.90
Sequence Information
- Coding Sequence
- ATGGCAAAACGCGGACAATAtggaaaatggaacgaaaaaaGTATGGAAGATGCCATAACTGCATACAAAAATGGTGTCGCaggtttaaatgaaatagctAGAAGATATAACGTACCAAAAGCTACGCTGAAACGGAGAAGTGacgagaaaaacaaaaaggttcacggtagtataaaaaaaatgggtGGCGCAGATCTTCCACtagaattagaaaaagaaatagtctTCAAAGTCAGTACctgcagaaaagaaagaaagatcccGAGAAAAGAAACAGGTTGTGGTACAGGATTCTTCAAGTGA
- Protein Sequence
- MAKRGQYGKWNEKSMEDAITAYKNGVAGLNEIARRYNVPKATLKRRSDEKNKKVHGSIKKMGGADLPLELEKEIVFKVSTCRKERKIPRKETGCGTGFFK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01070287; iTF_01069584; iTF_01070288; iTF_01069585; iTF_01068213; iTF_01068214; iTF_01068215; iTF_01068217; iTF_01068218; iTF_01068219; iTF_01068220; iTF_01066175;
- 90% Identity
- iTF_01070287; iTF_01069584; iTF_01070288; iTF_01069585; iTF_01068213; iTF_01068214; iTF_01068215; iTF_01068217; iTF_01068218; iTF_01068219; iTF_01068220;
- 80% Identity
- -