Basic Information

Insect: Nomada goodeniana
Gene Symbol: -
Assembly: GCA_963969485.1
Location: OZ018305.1:1347049-1349797[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.0074 0.54 10.7 0.5 1 21 6 27 6 28 0.90

2 14 1.7 1.2e+02 3.3 0.0 2 20 34 52 33 54 0.90

3 14 0.9 65 4.2 0.4 1 12 236 247 236 256 0.89

4 14 0.0093 0.68 10.4 4.0 1 23 368 390 368 390 0.97

5 14 0.00047 0.034 14.5 0.9 2 23 394 415 394 415 0.97

6 14 0.0006 0.044 14.2 4.9 1 23 426 448 426 448 0.98

7 14 0.034 2.4 8.7 0.1 1 23 467 488 467 488 0.76

8 14 0.00064 0.046 14.1 0.1 2 23 494 515 493 515 0.95

9 14 4.5e-05 0.0033 17.7 3.5 1 23 544 566 544 566 0.99

10 14 1.8e-06 0.00013 22.1 1.8 3 23 574 594 573 594 0.99

11 14 0.0011 0.077 13.4 3.9 3 23 602 622 600 622 0.97

12 14 1.4e-06 0.0001 22.5 0.8 1 23 628 650 628 650 0.98

13 14 8.8e-05 0.0064 16.8 0.2 1 23 654 676 654 676 0.99

14 14 0.00038 0.028 14.8 0.2 1 23 684 706 684 706 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.0074	0.54	10.7	0.5	1	21	6	27	6	28	0.90
2	14	1.7	1.2e+02	3.3	0.0	2	20	34	52	33	54	0.90
3	14	0.9	65	4.2	0.4	1	12	236	247	236	256	0.89
4	14	0.0093	0.68	10.4	4.0	1	23	368	390	368	390	0.97
5	14	0.00047	0.034	14.5	0.9	2	23	394	415	394	415	0.97
6	14	0.0006	0.044	14.2	4.9	1	23	426	448	426	448	0.98
7	14	0.034	2.4	8.7	0.1	1	23	467	488	467	488	0.76
8	14	0.00064	0.046	14.1	0.1	2	23	494	515	493	515	0.95
9	14	4.5e-05	0.0033	17.7	3.5	1	23	544	566	544	566	0.99
10	14	1.8e-06	0.00013	22.1	1.8	3	23	574	594	573	594	0.99
11	14	0.0011	0.077	13.4	3.9	3	23	602	622	600	622	0.97
12	14	1.4e-06	0.0001	22.5	0.8	1	23	628	650	628	650	0.98
13	14	8.8e-05	0.0064	16.8	0.2	1	23	654	676	654	676	0.99
14	14	0.00038	0.028	14.8	0.2	1	23	684	706	684	706	0.97

Sequence Information

Coding Sequence: ATGGGATCGTTGAATTTCGTTTGCCCAATGTGCTGTGGGGAAACATTTAACAATCCACAGTCATTAAAGTACCATTTATTAAGCATGACGGATAACCTGTACTGTCCTGGCTGTTCGCAACGATCTGACTCGGTAATGGCTCTCATTCAACATTTGGATCGGTGTGGGCAGAGTGTCGAATCGGAGGCATTGTCTGAATCCAAACACGAACAGGAGCAAGAGGCTCAACATGAATCCGAACCAGACACAGAGGTACTAATGGGCACAAATGTTGAGGGGATAGATCAAAGCTTCTTAGCGACTGTGAACGACAGTGGAATTATGATAGTTGGAGGACCTCAAACCATTCAAGTCGATGAGAATGGGGACATAAAAGTCGTGGAAAAGATggaaacggaagaagtacagatggaGCAAAACTCTTTGGAATTTAAGATATCAGAAAAAGTTCCTAGTGCTACTAGCAAAGAAGACGAGAAATCTTTGTCCCAGGATCAACTAGTGGCAATTTCAACCATGTCAGAAGGAGATGAcagaaatcgaaataaaaatgttattactaTTTTGCCCGATGGATCGGAGCTTCTTGATGGCAATACTGGAGCCCTGATCAATATGGACCATATAAATGATGTAGGTGAACTAGACGAAGATGGACTGTTACACGTAAAACAAGAACTCTGCGAGATAGAACCAGAAGCAGTTTATAGTTGTACTAGTTGTGACATGAGCTTTAATTCTGTTGTGGAGCACATAAAGCAGTTTCACGATGGACAGGAAGTATTACTTGAAATAGCTGATCAATTAGATGATATACCTACAGTACCTGCAACCAACACCCTTCAGACATCAGAGTCAGGAAGCGGGGTTAACAGCCGGCACAGACAGAGTATGAATACTCTTCGGACAGAAGAATGTGTGGACAGTGAGGGGAGATTATATACAAGAAAAGTAGTACAAATAGAAAGATTCTGGGACAGAACTCCAGTTCAGACGCCACTTCAATCTACTAAGGCACCTATGATTGAAAAATTTTTTTCCAATGTGGAAGGAGTAAAAGTGCGGGAGAAAAGATTGGCAGCAGCAGCACCCATGAGAATGTACAGATGTAATCAGTGCTTTCAACAGTTCTCGAAATTGGGCAACTTCCGAGTACACGCGTGTCTTCATGGAAGTAATCGGTGTGATAGCTGCCACCAGACTTTTGCAACGCCAAAGGCATTGCAGCTTCATGCAAAGGTTCATGAAGGTGAACCTGATCCGAATCAAAAGACTTTCGTGTGCGAAACCTGTGGTACGGAGTTTTGTTCGCACAAAAGTCTACGGTTGCATTCTCGAATGCATGCTCCAGTTAGGGCTAGGCACGTTGACGCACCGGAGGGAACACCAAATGCAACGTTTACATGTCCCGAATGcggtAAAACATTAGCCGAATCGTACAAAGAAGCGCACATGGCATTGCACTCCGGTGAATCTGTAACTTGTACAGTATGCAATAGAAAATTCGATTCTGCCGATAGTTTAGCGATGCATGCTGCCGTACATATGGAAATAAGTCAACCACATTCACCTATACCACCAGCTACAGAAACTACCACAAATGGTGAACTCAACGAGAATCAAAAGCCTTATCAGTGTCAACACTGCGGACGAGGATTTACAAGACCTCACGAGAAAGTAAAACACGAACGTATTCATACTGGGGAAAAACCTCATGGATGCGAAGTCTGTGGCAAAACTTTCCGAGTTTCTTATTGCTTAACATTGCACATGAGAACTCATACTGGCGTTAGACCATACGGATGTCAACACTGTGGAAAGAGATTCAAGGCTTCTTCCGTTTACAATCATCATTTACTCACACACGGAGATGAACGCGCTTACACGTGCCCGTACTGCCCAAAAACATTTAAAACGCGCGTTCAATTGGCAGGGCATAAGAATAGTCATACTAAACCATTTCGATGTACCGAGTGTTCACGACCTTTTGCTTCATTGTATGCTGCTCGAGCTCATATACAAACTCATAAGAAGGACAATAATTTAAAGTTCAGTTGCTATATTTGTGGCGCATCCTATGGTAGAGCATTTGCCTTGAAAGATCATTTAAAACAACATGGCCAAGATGTGCTAGCACCACCAGAGCCGGtaagggaagaagaaattcATGAAGGTGAAGAGTTTCTGCTTGCAGAGGAAGAAGTTGAGGATGATGAATTGGCTATTCCATCGCCATTACCCGTCGCTCAATCATCGGAAGCTGATGACACTGAATGA
Protein Sequence: MGSLNFVCPMCCGETFNNPQSLKYHLLSMTDNLYCPGCSQRSDSVMALIQHLDRCGQSVESEALSESKHEQEQEAQHESEPDTEVLMGTNVEGIDQSFLATVNDSGIMIVGGPQTIQVDENGDIKVVEKMETEEVQMEQNSLEFKISEKVPSATSKEDEKSLSQDQLVAISTMSEGDDRNRNKNVITILPDGSELLDGNTGALINMDHINDVGELDEDGLLHVKQELCEIEPEAVYSCTSCDMSFNSVVEHIKQFHDGQEVLLEIADQLDDIPTVPATNTLQTSESGSGVNSRHRQSMNTLRTEECVDSEGRLYTRKVVQIERFWDRTPVQTPLQSTKAPMIEKFFSNVEGVKVREKRLAAAAPMRMYRCNQCFQQFSKLGNFRVHACLHGSNRCDSCHQTFATPKALQLHAKVHEGEPDPNQKTFVCETCGTEFCSHKSLRLHSRMHAPVRARHVDAPEGTPNATFTCPECGKTLAESYKEAHMALHSGESVTCTVCNRKFDSADSLAMHAAVHMEISQPHSPIPPATETTTNGELNENQKPYQCQHCGRGFTRPHEKVKHERIHTGEKPHGCEVCGKTFRVSYCLTLHMRTHTGVRPYGCQHCGKRFKASSVYNHHLLTHGDERAYTCPYCPKTFKTRVQLAGHKNSHTKPFRCTECSRPFASLYAARAHIQTHKKDNNLKFSCYICGASYGRAFALKDHLKQHGQDVLAPPEPVREEEIHEGEEFLLAEEEVEDDELAIPSPLPVAQSSEADDTE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00625657;
90% Identity: iTF_00226756;
80% Identity: -