Ngoo012099.1
Basic Information
- Insect
- Nomada goodeniana
- Gene Symbol
- -
- Assembly
- GCA_963969485.1
- Location
- OZ018305.1:17152228-17156724[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0047 0.34 11.4 2.6 3 23 94 114 93 114 0.96 2 18 1.4e-05 0.001 19.3 2.1 1 23 120 142 120 142 0.99 3 18 0.00014 0.01 16.1 0.9 1 23 147 170 147 170 0.98 4 18 0.0031 0.22 11.9 2.9 1 20 176 195 176 198 0.94 5 18 1.9e-06 0.00014 22.1 2.6 1 23 203 226 203 226 0.97 6 18 1.2e-05 0.00087 19.5 0.6 2 23 235 256 234 256 0.93 7 18 2.3e-06 0.00017 21.8 2.2 1 23 260 282 260 282 0.98 8 18 0.00022 0.016 15.6 0.1 1 23 288 310 288 310 0.98 9 18 0.0011 0.078 13.4 0.7 2 23 537 559 536 559 0.95 10 18 0.00095 0.069 13.5 0.6 1 23 563 585 563 585 0.98 11 18 0.00095 0.069 13.5 2.2 1 23 591 614 591 614 0.96 12 18 2.8e-05 0.0021 18.3 0.7 1 23 621 644 621 644 0.97 13 18 0.007 0.51 10.8 4.4 1 23 679 702 679 702 0.93 14 18 0.99 73 4.0 0.2 5 21 715 731 714 732 0.90 15 18 0.0038 0.28 11.6 1.9 1 23 739 761 739 761 0.91 16 18 5.4e-08 4e-06 26.9 1.7 1 23 765 787 765 787 0.96 17 18 1.9e-05 0.0014 18.9 1.2 1 23 793 815 793 815 0.97 18 18 4.9e-07 3.6e-05 23.9 1.3 1 23 821 843 821 843 0.99
Sequence Information
- Coding Sequence
- ATGCTCGCTTCTTCTCCGATTGCGCGCGACGCAAACTGCGACCCGAAATTGCACCGATCCGTTCATTGCCACGCAGGCCCGGGGAACGTAGAAGTGTACGTGAAAACCGAAGGCGACTGCGATAAGGACATTGATATCTGTGCCGATTCCTCAACAACCCTGTCTGCATCGTCGTTGGCGGGTCAAACCGAACGGATCCCAGTCTCTGTCCCCGATTCGCATAGAAATGCCGTTCTGATACACACGTTAAATAAGGACGACGCGGATCGAAAACGATACTGCGTCGTCTGCAAGGTGTACTTCTGCAGACAGAGGGACTACAAGCGTCACATGGTGATGCACAGCGATATAACGCCGTACAAATGCGAGACCTGCCACCTCACCTTCAAACGTTTGTCCGGGCTGGCCGTGCACAAGCGGATTCATCGCGGGATCAAGTTCACGTGCGAGATCTGCGGCTACGCCACGATGAGGAAGCCTTCCCTGACAATGCATCGCCGGAGGTTCCACGAGCGTGACTACTCGTTCCCCTGCAACCAGtgcgacaaatttttcatgTCGAACGCCGACCTTCAGGACCACAAAAGCTGTCACCTGGGCGAAACGTTCACCTGCGACACCTGCGAGAAGGTATACTCGCAGAAGAGCTATTTGAAACGGCACGAACGCAAAATGCACGAAACGCCCGAACCCCGTAACATTAAGTGCAACGTGTGCAACAAGAGTTTCGTCAGCGAGAGCAAGCTTCGCAAGCATGTCGTGTTGCACTCGCAGGTACACAGGTGTTCCTACTGCGGCAAAGAGTTCACGAACCGTCGAGCATTGAACGCGCACAACAGGATACACACAAGGGAGAAACCGTACAAGTGTAAAGTTTGCACGAAAGGTTTCGCCGCTTTGTCGTCGCTCGCTGTGCACGAAATCACGCACACCGCGAGGTCGCCGATCGCAGAAACGACTCGGGGCCAAGATAGAAATGATCGAGTGCCATTCCAAGTTACTGTTCCAGTGTCTAGCCTGTCCGCGCGTGATTCGACGCCGTGGAAAATCGAAGCGGACTGCGACGTCGTCGACGGCGTGGGAACGAAGGCGATCGTTGAAACCGAGGTTGACCGCGGTGCGACCGCGGGGAAACGAACGTGCGACGAGACGTCGGTGGACTCGACGAATACAGTTTTGGTGCCCGTTCGGGATCCAGTGACGAAGCAAGTGAGAAATATATTGGTACCGGTTGAAGTGAAGGACGAATCCGGCATGAACATCATCAAGAGTGTGTTGATACCGGTCCACGGGGGCGATGGATTGGTGTCGTACGAGATCAAACGGGTCGTGGTACCGATCCAGCCGGTACTGAGCGGATCCCAAAGGAGACAGAGCGACGCCAGGTCGGGgatgaatagaaataaatggaaGGAAGCCGGTAACAAGAGTGCCAAAGAGCGGGAAGAGAGGATCAGATTGGAAGCGGAGGAAAGGGAGATGGAGCGGATAAAGAACTCGGCAGGAGACGAGGCGAAAACGCCGGAAGACACGGTGAAAGGTGTACCGGCAGAAAATGTACCGAGGGGGGACGCGGATCAAGTCGACATTCTGGACACACTGCGCACAACTTGCCCGTTCTGCCAGAAACGTTACAAGGACGTGGACGAAATGCAGAAGCACGTCTCGAAGGTGCACAAGAAGCCGTACAATTGCGACAGGTGTCGCAAGGGTTACATCACCGATTACGCGTTGGAGGAGCATCAGAAGACGCACGAGGTGACTTCCTTCCATCAGTGTAGCGTCTGTCAGTTGCAGTACAAAACCGCGAGTGGCCTGAAGAACCATCGGACCCGCGAGCACACCAATCTGCAGCCGAACTTCATGTGCGACTACTGCGGGAAACGGTTCAAGCTGAAACTGGACCTTGCCCTTCACATCAATCGATCGCACACGAACGCCACGCACATATGCAGGTTCTGCGGTATGGGGGTGAAGAACATCGCCCATCACGAACTGAAGCACGGACAGGCGATTAAAGCGACGCCGTCCACGCATTGCTGCAAGCTCTGTCCGAGAACGTTCAAGGCGCGCAACAGCTTGGAGAATCATTTACTGTTGAAGCACAAGGATTCGCAGGGGGGGCCCGACATGCTGCGAACGCTCTGCGAGAAACCGTTcgaatcgaggaacgattTCTATCAACACCTGCACAGCCAAACGGAGGTAAGACAGCACAAGTGCGACGTCTGCGGAAAAGTCTGCGCCAACGAGGAAAATCTACGTTTCCACGTCACCCTGCACTCGCAGACGTTCCTCTGCCCCCACTGCGGCAAGGTCTTCTCGACGAATTACTCGCTGAAACTGCATCTCCGCGTGCACACGGGTGAACAACCGTATCAGTGCAAGGAGTGCCTTAAATCGTTCACGAGAACTACGTCGCTTAGGGTGCACGAGCTGATCCACACCGGTCAAAGGCCGTACGTTTGCGATATATGCGGGCGCAAATTCACTCAGAGGAGCAGCATGATGGTGCATCGTCGGAAACACCCTGGAAATCatccgccgccgccgcctaTAGTGCTGAGCAAACGCAAGAATAACGAGCATTAG
- Protein Sequence
- MLASSPIARDANCDPKLHRSVHCHAGPGNVEVYVKTEGDCDKDIDICADSSTTLSASSLAGQTERIPVSVPDSHRNAVLIHTLNKDDADRKRYCVVCKVYFCRQRDYKRHMVMHSDITPYKCETCHLTFKRLSGLAVHKRIHRGIKFTCEICGYATMRKPSLTMHRRRFHERDYSFPCNQCDKFFMSNADLQDHKSCHLGETFTCDTCEKVYSQKSYLKRHERKMHETPEPRNIKCNVCNKSFVSESKLRKHVVLHSQVHRCSYCGKEFTNRRALNAHNRIHTREKPYKCKVCTKGFAALSSLAVHEITHTARSPIAETTRGQDRNDRVPFQVTVPVSSLSARDSTPWKIEADCDVVDGVGTKAIVETEVDRGATAGKRTCDETSVDSTNTVLVPVRDPVTKQVRNILVPVEVKDESGMNIIKSVLIPVHGGDGLVSYEIKRVVVPIQPVLSGSQRRQSDARSGMNRNKWKEAGNKSAKEREERIRLEAEEREMERIKNSAGDEAKTPEDTVKGVPAENVPRGDADQVDILDTLRTTCPFCQKRYKDVDEMQKHVSKVHKKPYNCDRCRKGYITDYALEEHQKTHEVTSFHQCSVCQLQYKTASGLKNHRTREHTNLQPNFMCDYCGKRFKLKLDLALHINRSHTNATHICRFCGMGVKNIAHHELKHGQAIKATPSTHCCKLCPRTFKARNSLENHLLLKHKDSQGGPDMLRTLCEKPFESRNDFYQHLHSQTEVRQHKCDVCGKVCANEENLRFHVTLHSQTFLCPHCGKVFSTNYSLKLHLRVHTGEQPYQCKECLKSFTRTTSLRVHELIHTGQRPYVCDICGRKFTQRSSMMVHRRKHPGNHPPPPPIVLSKRKNNEH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -