Basic Information

Insect: Nomada goodeniana
Gene Symbol: -
Assembly: GCA_963969485.1
Location: OZ018305.1:17186902-17190163[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 0.099 7.2 7.2 7.6 1 23 33 56 33 56 0.96

2 19 3.4e-06 0.00025 21.2 0.3 1 23 62 84 62 84 0.97

3 19 2.1e-05 0.0015 18.8 1.4 1 23 90 112 90 112 0.97

4 19 0.0033 0.24 11.8 0.2 1 23 118 140 118 140 0.98

5 19 3.7e-07 2.7e-05 24.3 4.2 1 23 146 169 146 169 0.98

6 19 0.00037 0.027 14.8 0.8 1 23 185 208 185 208 0.96

7 19 0.011 0.77 10.3 0.6 3 23 218 238 216 238 0.95

8 19 2.8e-05 0.002 18.4 0.5 2 23 245 266 245 266 0.98

9 19 0.00015 0.011 16.1 0.1 3 20 274 291 273 293 0.96

10 19 0.11 8 7.1 0.7 2 23 328 350 327 350 0.96

11 19 6e-06 0.00044 20.5 0.8 1 23 356 379 356 379 0.98

12 19 0.93 68 4.1 0.3 2 23 385 406 384 407 0.93

13 19 3.5e-05 0.0025 18.1 0.2 1 23 412 434 412 434 0.98

14 19 0.0086 0.63 10.5 0.5 2 23 441 463 440 463 0.94

15 19 0.0001 0.0075 16.6 2.0 1 23 484 507 484 507 0.93

16 19 0.0022 0.16 12.4 0.1 1 23 518 540 518 540 0.95

17 19 0.0084 0.61 10.6 3.6 1 23 546 568 546 568 0.94

18 19 5.1e-07 3.8e-05 23.8 1.1 1 23 574 596 574 596 0.98

19 19 1.8e-05 0.0013 19.0 0.1 1 21 602 622 602 623 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	0.099	7.2	7.2	7.6	1	23	33	56	33	56	0.96
2	19	3.4e-06	0.00025	21.2	0.3	1	23	62	84	62	84	0.97
3	19	2.1e-05	0.0015	18.8	1.4	1	23	90	112	90	112	0.97
4	19	0.0033	0.24	11.8	0.2	1	23	118	140	118	140	0.98
5	19	3.7e-07	2.7e-05	24.3	4.2	1	23	146	169	146	169	0.98
6	19	0.00037	0.027	14.8	0.8	1	23	185	208	185	208	0.96
7	19	0.011	0.77	10.3	0.6	3	23	218	238	216	238	0.95
8	19	2.8e-05	0.002	18.4	0.5	2	23	245	266	245	266	0.98
9	19	0.00015	0.011	16.1	0.1	3	20	274	291	273	293	0.96
10	19	0.11	8	7.1	0.7	2	23	328	350	327	350	0.96
11	19	6e-06	0.00044	20.5	0.8	1	23	356	379	356	379	0.98
12	19	0.93	68	4.1	0.3	2	23	385	406	384	407	0.93
13	19	3.5e-05	0.0025	18.1	0.2	1	23	412	434	412	434	0.98
14	19	0.0086	0.63	10.5	0.5	2	23	441	463	440	463	0.94
15	19	0.0001	0.0075	16.6	2.0	1	23	484	507	484	507	0.93
16	19	0.0022	0.16	12.4	0.1	1	23	518	540	518	540	0.95
17	19	0.0084	0.61	10.6	3.6	1	23	546	568	546	568	0.94
18	19	5.1e-07	3.8e-05	23.8	1.1	1	23	574	596	574	596	0.98
19	19	1.8e-05	0.0013	19.0	0.1	1	21	602	622	602	623	0.96

Sequence Information

Coding Sequence: ATGTGTCCAAAATACGAATTAACATGCCATTGCTCACCTGTAAACAATATATCATCGAACATCGGTAGGTCACGAAGAGTGATCACACGAGCCGTTCACGAGTGCGTTAAATGCGGTGCCTGTTTCTGCCACACGAGGAAGCTCGTGGAGCACCTGAAGAACCTCCACGGAATCGAGAGGGCCTTCAGCTGCGACGAGTGCGGCAAAACGTTCAGAAGCCCCATGAACATAGCCCGTCACAAACTGATACACACCGGTTCGAAGAGGTTCGCCTGCGACCTGTGCGACTACAGATCGAACCAAAAGTCCAATCTGGAGAGTCATCGCCGACGGCACACCAGAGATTACTCGTTCAGGTGCGAGCAATGCCGGAAGGGTTTCGTCCTGCGGGCAGAGTACCTCGAGCACGTGAACGTTCACACGGGGAAACAAGTGTACCGGTGCGACCATTGCGACAAGTCGTAcccgtataaaaaaaatttaaccAACCATCTGAGAACGCAGCACGCGAATATTCTGCCCGCGGAATTGAAGAACGACCCGCCGCGGAGGCACCCGTGCACCATTTGCCTGGAAACGTTCCCGAGGAAATTGTCCCTGGAGGGGCACATGAGACAGCGACACGGGGTCCGGGAGAAAACGAAACATCTGTGCGATCTGTGCGGCGCGGTGCTGTCTTCTAAGAGGAGACTGATGGTGCACAGGCGGGGCCACGTCAACGAGAAGATTGCGAAATGCGATTTGTGCGAGAAAGAATTCTCGAGCAGGGAGAACCTCGGCATTCATCGGCGCGTGCACACCGGCGAAAAGCCGCACGGTTGCCCGCAGTGTGGCAGACGATTCACGCAGAGGACGTCTTTGATCCTGCACCTGAGCGACTGGGACAACGATCACGACGAGCTTACCAGCTGCGAAGTTTTCAGAGTCAAGAGCGAGGATATCCTTCACGATCCTGGACAGAAAttcgaaggaaacgagaaGGTCTGCGACCTTTGTCAAGAAAAGTTTCACTTCGTGACGAGATTGGTGGCGCACCTGAGGATCGTTCACGGTATCCACAGGCCCTTCAAATGCGGCACCTGCGGCAAAACATATCCGCAGCAATTCATGCTGAATGCTCACGTGAAAAAGTCCCACACGCCTAAGACAAGTCCGTGCGGTCAGTGCAGTTTCATGGGGGTAAACGCCGCGGACGTGGAGAGGCACTCGAAGCGACACCATCGGGAGGTGAAGTTCACCTGCGAAATCTGCAGCGAGAACTTCGTGGACAAGGACACCCTCATAACCCACACAGCCATGCACAATTTCATGCAATATCAACAGTGCAACGCTTGCGGCAGCACTTTCAACGATGTTTACAGTTTAAAGGAGCACAATCGCCTGTACCACTACGACCCGGCGGCACCAACGGAGGAGAAGCCCGAGGCACGCGACCCACAGAATATCGAGCACAAATGCGACATTTGCGGGAAAATTTACAAGTACAAGTCGGTGCTCAAGCAGCACAAAGTCAAGGCACACGGTGACACGCCGAATTATGAGAGGCGCCGATATTTGTGCGCGCTTTGCGGCAAGGAGCTTAAAACGGCGAAAGGTCTCGAGATCCATAATCGTTCGCACACCGGCGAAAAACCGTACACCTGCGAGGTGTGCGGCAAATGTTTCGCCTGTGAAACATTGCTCAGGACTCACAATGTCACCCACACCGGCGAACGGAAGTACTCGTGTGATCAGTGTGGAAAGGCCTTCACGCAGAGGTCCACGCTGGTGGTGCACAAACGTTACCACACAGGCGAACGTCCATACGTTTGTCCCAGGTGTGGAAAAGGTTTCGTCACTAGAACTGTTTTGAACACTCACATGAAGTCCTGTCGCTGA
Protein Sequence: MCPKYELTCHCSPVNNISSNIGRSRRVITRAVHECVKCGACFCHTRKLVEHLKNLHGIERAFSCDECGKTFRSPMNIARHKLIHTGSKRFACDLCDYRSNQKSNLESHRRRHTRDYSFRCEQCRKGFVLRAEYLEHVNVHTGKQVYRCDHCDKSYPYKKNLTNHLRTQHANILPAELKNDPPRRHPCTICLETFPRKLSLEGHMRQRHGVREKTKHLCDLCGAVLSSKRRLMVHRRGHVNEKIAKCDLCEKEFSSRENLGIHRRVHTGEKPHGCPQCGRRFTQRTSLILHLSDWDNDHDELTSCEVFRVKSEDILHDPGQKFEGNEKVCDLCQEKFHFVTRLVAHLRIVHGIHRPFKCGTCGKTYPQQFMLNAHVKKSHTPKTSPCGQCSFMGVNAADVERHSKRHHREVKFTCEICSENFVDKDTLITHTAMHNFMQYQQCNACGSTFNDVYSLKEHNRLYHYDPAAPTEEKPEARDPQNIEHKCDICGKIYKYKSVLKQHKVKAHGDTPNYERRRYLCALCGKELKTAKGLEIHNRSHTGEKPYTCEVCGKCFACETLLRTHNVTHTGERKYSCDQCGKAFTQRSTLVVHKRYHTGERPYVCPRCGKGFVTRTVLNTHMKSCR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00361060;
90% Identity: iTF_00684909;
80% Identity: -