Nfuc011387.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Nomada fucata
Gene Symbol
Prdm15
Assembly
GCA_948146005.1
Location
OX411282.1:878718-881380[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 3.4e-06 0.00022 21.1 1.0 1 23 250 272 250 272 0.98
2 12 0.0015 0.096 12.9 3.9 1 23 277 299 277 299 0.97
3 12 0.00065 0.043 14.0 1.1 3 23 310 330 309 330 0.98
4 12 4.6e-05 0.0031 17.6 6.2 1 23 423 445 423 445 0.98
5 12 0.0031 0.2 11.8 2.8 1 23 450 474 450 474 0.90
6 12 6.7e-06 0.00044 20.2 0.6 1 23 513 536 513 536 0.92
7 12 2.6e-07 1.7e-05 24.6 1.1 1 23 569 591 569 591 0.99
8 12 0.00015 0.0099 16.0 4.0 1 23 605 627 605 627 0.96
9 12 0.00014 0.0094 16.0 4.7 1 23 633 655 633 655 0.98
10 12 0.0013 0.083 13.1 3.2 1 23 661 683 661 683 0.98
11 12 8.8e-05 0.0058 16.7 6.6 1 23 689 711 689 711 0.97
12 12 0.00061 0.04 14.0 0.4 1 21 717 737 717 738 0.93

Sequence Information

Coding Sequence
ATGGAAATCGAAAATAAAACAGAAATTTCATCAAATGTGCGTGACAATGTTTGCCGCGTTTGTCTTGCAAAGAATCGAAATAACCAATGCATTTTTGGGATCCAACAAAATGATCCGACTAAGAGAGAAACAATTGATTTGTCTGAGAAACTCCGTTTGTGTAGCGGTATTGAGATATTGGAGAACGATGGCTTACCTTCCACTATTTGTATAAAATGCATATCTAAGATCAATAATGCCCATGAATTAAGAGAGCAATGTCAGGATTCTGATATTCGATTAAGGGAATTGTATGGAAAGGTAGAAAGGATATATAACATAAATCTATGTAAGATTACGAAAGATCAGTACTGTCAGACTGATTATTCCTTCACCTGTGATTTAATCAAAGTAGAAACTGATACATTTTCTGCAATGGGTTGCAATCCTTATCCAACGATAAATCTAAGCTCCACTAGAGAGGATCAGATATCTGAGGATACAGAAGCAGAAGAAGAAGAGGAAGAATTTGGTAGTAGCTTGATTGAACATAATACTCCTATTAAATCTAAGCAAGGGGGATGCGAAAAGAACATCACAGGAAGAGAAGCCTATCGGACAAGAAGAATGACAATGTTTAAAAGAGTAACATCTATAGAAAATTTAAGAAATCATAAAGAAAGGCAAAGACAGTACATAAAAAAGAATGGGAATATCAAGCGAGATGATGAGTTAACATGTATTAAAGAAACAGATACACAAAGTTCTTACTCATGTCCCAAGTGTGGTAGGTTTTATTCCAGCAAAAGATCTTTAGATAGGCATATAGTAACGCATGGTGAGAAAAAGTTCACCTGCGAGAAATGTGACAAACATTTTTTTCAACTTGATAAGTTGGTACAGCACAGCAAATTGCACACAGTTAAAGAAAAGTCTAAGCCTGTATTATGTAACATATGTAACAGAAATTTCAGAAAAACTGATACTATGGTAAGGCATTTAAATGTTCATAAAAAAAGTAATCCTAAGGAAGTGCTCTCCATTTTGAAGGAAATTAGAGATAGAAGAAAGTTGGAAAACATCACGAATCCTCGTGAAGAAATGTGTGAGAGTGAAACTTCTACCGATGGCAACAAAATAGGCGAAAAATTTGCAGCTAATCAAAAAATGCACATAGACATTCACAGAAAAAATGTGTTAGTGTCCAAAAGGAAAGAATCGCATTGCAATTTATCATCCTGTGATGTTGGCACTGAGAAACTCGACTTACACGATCATGAATCGCGTCATCGTTGTAAATATTGTAACAAATGTTATGCAAATGAAAGATCGCTTCAAAAACATTTACAGATTCATATTGAAAAGAAATTTGTTTGTAATGTATGTAACATGAAATTTTTCCGACAGGATAGATTAAACAGCCATAAAAATCGATATAGACACGACGAGGATTCAACATCGATGGATATACAAAAACCATCCGACGAAAAATCAGCTATTAAATTGATTAACAGCTGGATCAGGGAAGAACTTGACTCGGACAATGAAGAGAAAGGCTTCCCTTGTAAAATTTGTGGAAAATCATATGATACGAAAAAATCTTTATTAAAACATAAATTAGGCGCACATAATTCGAAGGAAGAAAACTGTTTCAGCTGTGGCAAAATGTGCACTTGCAATGAAAAAGACAAGGAACAACCGAAATCAAGTGAAATTCTAAAACCATATCGATGCGACGAATGCACGAAATCCTTTGAGAATGAAGTTAAGTTACAGAAGCATATGAGAATTCATGAACGGGCTAAGGAACAGCAGGATGTGAATTTTAAGCGAtttttatgtcatatatgtagtaagacttttaggcaaaatacaggcctcatgtttcatatgagaacgcatactggatacaaacctcacgtatgcaaatattgtggaaggggattcacatcgaattctaactgtatcaatcatgaaaggacacacactggcgatagaccattcgtttgtcatttctgtagtgctgcttttgcaaaatcatgtactcttaaagcacacattacgacgcatacaggagaagcaaattaccattgtaaaacttgtggcaagtcatttagaagattaaagtacttaaaggaacacaagttcacgcatacaggggaaaagccgtatgcttgtaaactctgtggcacagcctACAGCCACTCGGGCAGTTTATTCGTGCATGAAAAGAAATGTAAAGCACAATATAATACCTATCAATCTAACTCATCGCAAACTGTGCAAAATTATTGTGAATCTGAAACGTCTTCACCAAGCGCTACTCCTATCATCACTGTTCTACCACATCTGAATAATGCCTCTACAATGGACACCCAAAATAGCAAAACTTATATTGATAATATTCAGAGAATGAATTCTCAAAGTATTGGTGTTATAAATAATGTTAATGCGTCGGATCTACATATTCATCCGAATTCGGATATTTCTGATGTTTCTTTAGCTGTAAAAAGCTTTGCACTTATTGGTCAAATGTTTCAATCGTAG
Protein Sequence
MEIENKTEISSNVRDNVCRVCLAKNRNNQCIFGIQQNDPTKRETIDLSEKLRLCSGIEILENDGLPSTICIKCISKINNAHELREQCQDSDIRLRELYGKVERIYNINLCKITKDQYCQTDYSFTCDLIKVETDTFSAMGCNPYPTINLSSTREDQISEDTEAEEEEEEFGSSLIEHNTPIKSKQGGCEKNITGREAYRTRRMTMFKRVTSIENLRNHKERQRQYIKKNGNIKRDDELTCIKETDTQSSYSCPKCGRFYSSKRSLDRHIVTHGEKKFTCEKCDKHFFQLDKLVQHSKLHTVKEKSKPVLCNICNRNFRKTDTMVRHLNVHKKSNPKEVLSILKEIRDRRKLENITNPREEMCESETSTDGNKIGEKFAANQKMHIDIHRKNVLVSKRKESHCNLSSCDVGTEKLDLHDHESRHRCKYCNKCYANERSLQKHLQIHIEKKFVCNVCNMKFFRQDRLNSHKNRYRHDEDSTSMDIQKPSDEKSAIKLINSWIREELDSDNEEKGFPCKICGKSYDTKKSLLKHKLGAHNSKEENCFSCGKMCTCNEKDKEQPKSSEILKPYRCDECTKSFENEVKLQKHMRIHERAKEQQDVNFKRFLCHICSKTFRQNTGLMFHMRTHTGYKPHVCKYCGRGFTSNSNCINHERTHTGDRPFVCHFCSAAFAKSCTLKAHITTHTGEANYHCKTCGKSFRRLKYLKEHKFTHTGEKPYACKLCGTAYSHSGSLFVHEKKCKAQYNTYQSNSSQTVQNYCESETSSPSATPIITVLPHLNNASTMDTQNSKTYIDNIQRMNSQSIGVINNVNASDLHIHPNSDISDVSLAVKSFALIGQMFQS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01070544;
90% Identity
iTF_01066444;
80% Identity
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