Basic Information

Insect: Nomada fucata
Gene Symbol: -
Assembly: GCA_948146005.1
Location: OX411282.1:6127168-6134057[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.00071 0.047 13.8 0.8 2 23 412 434 412 434 0.96

2 17 0.00026 0.017 15.2 1.5 1 23 438 460 438 460 0.96

3 17 0.0034 0.22 11.7 0.8 2 23 467 489 466 489 0.95

4 17 0.067 4.4 7.6 0.5 1 21 496 516 496 519 0.78

5 17 4.4 2.9e+02 1.9 0.1 1 11 524 534 524 538 0.80

6 17 1.6e-06 0.0001 22.2 2.0 1 23 554 576 554 576 0.98

7 17 6.7e-06 0.00045 20.2 1.0 1 23 580 603 580 603 0.97

8 17 0.037 2.4 8.4 4.9 3 23 609 629 608 629 0.98

9 17 4.8e-08 3.2e-06 27.0 1.1 1 23 635 657 635 657 0.99

10 17 0.013 0.88 9.8 0.4 2 23 798 820 798 820 0.92

11 17 0.0041 0.27 11.4 3.0 1 23 824 846 824 846 0.98

12 17 0.0018 0.12 12.6 1.6 1 23 852 875 852 875 0.94

13 17 0.00033 0.022 14.9 6.2 1 23 882 905 882 905 0.97

14 17 1.1 75 3.8 9.1 1 23 940 962 940 962 0.97

15 17 0.0013 0.088 13.0 3.8 1 23 966 989 966 989 0.94

16 17 0.0016 0.1 12.7 0.6 5 23 999 1017 996 1017 0.92

17 17 4.2e-06 0.00028 20.8 1.4 1 23 1023 1045 1023 1045 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.00071	0.047	13.8	0.8	2	23	412	434	412	434	0.96
2	17	0.00026	0.017	15.2	1.5	1	23	438	460	438	460	0.96
3	17	0.0034	0.22	11.7	0.8	2	23	467	489	466	489	0.95
4	17	0.067	4.4	7.6	0.5	1	21	496	516	496	519	0.78
5	17	4.4	2.9e+02	1.9	0.1	1	11	524	534	524	538	0.80
6	17	1.6e-06	0.0001	22.2	2.0	1	23	554	576	554	576	0.98
7	17	6.7e-06	0.00045	20.2	1.0	1	23	580	603	580	603	0.97
8	17	0.037	2.4	8.4	4.9	3	23	609	629	608	629	0.98
9	17	4.8e-08	3.2e-06	27.0	1.1	1	23	635	657	635	657	0.99
10	17	0.013	0.88	9.8	0.4	2	23	798	820	798	820	0.92
11	17	0.0041	0.27	11.4	3.0	1	23	824	846	824	846	0.98
12	17	0.0018	0.12	12.6	1.6	1	23	852	875	852	875	0.94
13	17	0.00033	0.022	14.9	6.2	1	23	882	905	882	905	0.97
14	17	1.1	75	3.8	9.1	1	23	940	962	940	962	0.97
15	17	0.0013	0.088	13.0	3.8	1	23	966	989	966	989	0.94
16	17	0.0016	0.1	12.7	0.6	5	23	999	1017	996	1017	0.92
17	17	4.2e-06	0.00028	20.8	1.4	1	23	1023	1045	1023	1045	0.98

Sequence Information

Coding Sequence: ATGCAAAGCGAGAGTTCCACTAATGTCGGTTGTTCTATAGAAGCTGTGACAAATTTACTAATGAGGTCGTCGATCGCAGAAACGACTCGGGGCCAAGATAGAAATGATCGAGTGCCATACCAAGTTACTGTTCCAGTGTCTAGCCTGGCCGCGCGCGACTCGACGCCGTGGAAAATCGAAGCGGACTGCGACGTCGTCGACGGCGAGGGAACGAAGTCGATCGTTGAAACCGAGGTTGACCGCGGTGGACCCGCGGGGAAACGAACGAGCGACGAGACGACGGTGGACTCGACGAAAACAGTTTTGGTGCCCGTTCGGGATCCAGTGACGAAGCAAGTGAAAAATATATTGGTACCGGTTGAAGTGAAGGACGAATCCGGCACGAACATCATCAAGAGCGTGCTGATACCGGTACACGGGGGCGATGGATTGGTGTCGTACGAGATCAAAAGGGTCGTGGTGCCGATCCAGCCGGAACTGAGAGGATCCCAAAGGAAGCAGAGCGATTCCAGGACGGGGATGAATAGAAATAAATGGAGGCAAGCCGGTAATAAGAGTGCCAAAGAACACGAAGAGAGGATCAGATCGGAGGCGGAGGAAAGGGAGAAGGAGCGGATAAAGAACTCGATGGGAGAAGAGGTGAAAACGTCGGAAGAAACGGAGAAAGAGTCGAACGAGATTTCCAACGGGTCAGCTGCGGTGGACGCGACGAGGACGAGGACGAGGACGGTCCTGGCGCCGATCAGAGATCCGCTGACGAACGAGATTAAGAACACGCTGGTGCCGGTGAAAGTGTTGGATAATTCTGGCACGAACATAATTAAAAATGTGCTGATACCGGTCCGCGGTGAGAACGGTGGCATGTCGTACGATGTTAGGAGCGTGGTTGTGCCGATCGAGCCACGGTACAGCTTTCCACGGAGAAGAAGAACGAGCAACAAAATAGCGACGAATACGGGTTCGTCGATACAGGCGACGAACGTATCGAATGAAGATCGACGAAGTGAACCGAGGGATGGTGATAGGACAAATGTATCGCCGGAAGAAACGGGAAGAATAGAAAGCTTCGCGAAAGAGCCAACGGAAGGAGCTTTTCAGGAGAAAGTATGCAAGCCAATATGTTCGTTCATCACGAACCAAGTGGAAATAGACGAGGAGCGATCTCGTACGACCCCTGAGACGGCTGAGCCGCCGAaggaagaggtggatcgaatattggacaacctgaggaacgtctgcccggtttgccagaagtatttcgtgaacgagaaaaagatgcagaggcacgtgaacaggtttcacaacaagacgcacaactgcgacaagtgcgacaagaggtactactcgaaggcgggcctcgagacacacgcgaaagtgcaccaggacgatttctatttggaatgctctgtctgccgtttaaggtacaaacgtagggccggattgaggcatcacgtgattcgagcgcacaacacagcggagccgaggtatatctgcgactactgcgggaagggtttccatttgaagatggacatcggtgttcacatcgagttcacccatatgaacgtcacgcatatctgccgcatctgcggcaaggccgcgaagaacattaggaatcacgagtaccttcacgagagacggctgagaaagatcaattgccggtatcgttgccgtctgtgcaacaaacgtttctcgacctcgaacaatttggagaatcacttgctgatgcacgagggcggcttcaaatgcgaccgttgcaacgaagcgttcacgcgacccagcaaactcgcgaggcataagaacgtgaagcacaggcccggctcgttgtgcacgatttgcgacaaagtgttccactgcaagagtaacttctatcagcacgtgctgacgcacgacggcgtcaggccgtacaagtgcgacatttgcggggaagattttacgcaaaggtccagccttctgaggcatcgaaggacgcactccgggccgcttccgcctttcacgggtatcgcgcacatcgccgatatcgccaagatgattttgctgaaAAGAGAACCAGTCGCAGCACTGCTAAGAAATCCAAACAGAAATTCCCCTTACCATTTCATAGTTGTCGGCCAGCGGAATAACGTCGCCGACAAATCGCCAAAAAGAAGGTCCAAGAAAAACGTCTCCTCGACGAATTCGCAGCGTTCAGAGCAAGATCCGCTTCAAGGGTCCCAAGAACGAAACTCCTGCACCGGTCCCAATCACGATCCCAAACGTCCACCCGATCCCGGGCAAGACTCGAGGAAACCAGCAGCAGAAATTCAGGCCGCCTCGTCGACGATAGAGGTGGACGCGATCAATCCGAAGAAAGAcgaagccgaggtggaccaggtgttggacgaaatcaggaacacctgtcccttctgcgagaagcgtttcgacagcgcgaagaaggtggaaaaccacgtgacgtacgtgcaccgtcaaccctacaagtgcgacaagtgcaagaaggcatgtcacacggctcgcgctttggaagagcacaagataatccatcggcccgattacttcttcgagtgcgaggtctgccgtgtgaagtacaaaagcgaggacagcctgaagaggcaccacgtgcgggtacacagcgactacgagtcgaaatacatttgcgagcactgcggtcgttgctacaagctgaagatcgatctgacccatcacatcaagcgaagccacatgtgggagctgcagatctgccgattctgcggcaaacaggtgagacacgtgaaggcgcacgagtggaagcatcagaggcgcatcaaggaggcggcgtacgagcacacctgtcacctgtgccgcaagaagttcctacacagaagccgactggacagccacatgaagctgcacgagaagggcttcaggtgcgaggagtgcgacaaggaattctgcgggaatcgcgagctgatgagccacaagaagttcaagcacggccacgggaaaatatccacctgcatactgtgccagaagacgttcccctccagtagcaattattatcagcacgtgttaacccatgccggaatcaggctgtacaaatgcgacgtctgcgaggaggacttcacgcaacgatccagcctcatgagacacaggaagaaccatcctgggccactgcccccgttgccgccgtcccatccgcagatcgccgaactggccaaaagCTACTTGGAGAAGATGCAGGGCGTTCAGATCGACAAAAGCTACGTGTTGAACGCGAGATTGTGA
Protein Sequence: MQSESSTNVGCSIEAVTNLLMRSSIAETTRGQDRNDRVPYQVTVPVSSLAARDSTPWKIEADCDVVDGEGTKSIVETEVDRGGPAGKRTSDETTVDSTKTVLVPVRDPVTKQVKNILVPVEVKDESGTNIIKSVLIPVHGGDGLVSYEIKRVVVPIQPELRGSQRKQSDSRTGMNRNKWRQAGNKSAKEHEERIRSEAEEREKERIKNSMGEEVKTSEETEKESNEISNGSAAVDATRTRTRTVLAPIRDPLTNEIKNTLVPVKVLDNSGTNIIKNVLIPVRGENGGMSYDVRSVVVPIEPRYSFPRRRRTSNKIATNTGSSIQATNVSNEDRRSEPRDGDRTNVSPEETGRIESFAKEPTEGAFQEKVCKPICSFITNQVEIDEERSRTTPETAEPPKEEVDRILDNLRNVCPVCQKYFVNEKKMQRHVNRFHNKTHNCDKCDKRYYSKAGLETHAKVHQDDFYLECSVCRLRYKRRAGLRHHVIRAHNTAEPRYICDYCGKGFHLKMDIGVHIEFTHMNVTHICRICGKAAKNIRNHEYLHERRLRKINCRYRCRLCNKRFSTSNNLENHLLMHEGGFKCDRCNEAFTRPSKLARHKNVKHRPGSLCTICDKVFHCKSNFYQHVLTHDGVRPYKCDICGEDFTQRSSLLRHRRTHSGPLPPFTGIAHIADIAKMILLKREPVAALLRNPNRNSPYHFIVVGQRNNVADKSPKRRSKKNVSSTNSQRSEQDPLQGSQERNSCTGPNHDPKRPPDPGQDSRKPAAEIQAASSTIEVDAINPKKDEAEVDQVLDEIRNTCPFCEKRFDSAKKVENHVTYVHRQPYKCDKCKKACHTARALEEHKIIHRPDYFFECEVCRVKYKSEDSLKRHHVRVHSDYESKYICEHCGRCYKLKIDLTHHIKRSHMWELQICRFCGKQVRHVKAHEWKHQRRIKEAAYEHTCHLCRKKFLHRSRLDSHMKLHEKGFRCEECDKEFCGNRELMSHKKFKHGHGKISTCILCQKTFPSSSNYYQHVLTHAGIRLYKCDVCEEDFTQRSSLMRHRKNHPGPLPPLPPSHPQIAELAKSYLEKMQGVQIDKSYVLNARL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01067762;
90% Identity: iTF_01067762;
80% Identity: -