Basic Information

Insect: Nomada fucata
Gene Symbol: -
Assembly: GCA_948146005.1
Location: OX411282.1:6098772-6104279[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 0.1 6.8 7.0 7.6 1 23 97 120 97 120 0.96

2 19 3.6e-06 0.00024 21.1 0.3 1 23 126 148 126 148 0.97

3 19 2.2e-05 0.0014 18.6 1.4 1 23 154 176 154 176 0.97

4 19 0.004 0.27 11.5 0.5 1 23 182 204 182 204 0.98

5 19 3.8e-07 2.5e-05 24.1 4.2 1 23 210 233 210 233 0.98

6 19 0.0016 0.11 12.7 1.2 3 23 251 272 249 272 0.94

7 19 0.011 0.72 10.1 0.6 3 23 282 302 280 302 0.95

8 19 8.2e-06 0.00054 19.9 0.5 2 23 309 330 309 330 0.98

9 19 0.00015 0.01 15.9 0.1 3 20 338 355 337 357 0.96

10 19 0.11 7.5 6.9 0.7 2 23 392 414 391 414 0.96

11 19 6.2e-06 0.00041 20.3 0.8 1 23 420 443 420 443 0.98

12 19 0.27 18 5.7 0.3 2 23 449 470 448 471 0.93

13 19 2.8e-05 0.0019 18.2 0.3 1 23 476 498 476 498 0.98

14 19 0.0089 0.59 10.4 0.5 2 23 505 527 504 527 0.94

15 19 0.00011 0.0071 16.4 2.0 1 23 548 571 548 571 0.93

16 19 0.0022 0.15 12.3 0.1 1 23 582 604 582 604 0.95

17 19 0.0086 0.57 10.4 3.6 1 23 610 632 610 632 0.94

18 19 5.3e-07 3.5e-05 23.7 1.1 1 23 638 660 638 660 0.98

19 19 1.8e-05 0.0012 18.8 0.1 1 21 666 686 666 687 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	0.1	6.8	7.0	7.6	1	23	97	120	97	120	0.96
2	19	3.6e-06	0.00024	21.1	0.3	1	23	126	148	126	148	0.97
3	19	2.2e-05	0.0014	18.6	1.4	1	23	154	176	154	176	0.97
4	19	0.004	0.27	11.5	0.5	1	23	182	204	182	204	0.98
5	19	3.8e-07	2.5e-05	24.1	4.2	1	23	210	233	210	233	0.98
6	19	0.0016	0.11	12.7	1.2	3	23	251	272	249	272	0.94
7	19	0.011	0.72	10.1	0.6	3	23	282	302	280	302	0.95
8	19	8.2e-06	0.00054	19.9	0.5	2	23	309	330	309	330	0.98
9	19	0.00015	0.01	15.9	0.1	3	20	338	355	337	357	0.96
10	19	0.11	7.5	6.9	0.7	2	23	392	414	391	414	0.96
11	19	6.2e-06	0.00041	20.3	0.8	1	23	420	443	420	443	0.98
12	19	0.27	18	5.7	0.3	2	23	449	470	448	471	0.93
13	19	2.8e-05	0.0019	18.2	0.3	1	23	476	498	476	498	0.98
14	19	0.0089	0.59	10.4	0.5	2	23	505	527	504	527	0.94
15	19	0.00011	0.0071	16.4	2.0	1	23	548	571	548	571	0.93
16	19	0.0022	0.15	12.3	0.1	1	23	582	604	582	604	0.95
17	19	0.0086	0.57	10.4	3.6	1	23	610	632	610	632	0.94
18	19	5.3e-07	3.5e-05	23.7	1.1	1	23	638	660	638	660	0.98
19	19	1.8e-05	0.0012	18.8	0.1	1	21	666	686	666	687	0.96

Sequence Information

Coding Sequence: ATGAAATTATTTCCATTTCGAACGAAAGTATGCACATCGAACTCCCCGCGTGATCCCCTGAACAGCGGCGGTGCGAACCCGTTGGAGGAGCTCTGCTACATCAAGATAGAAAACTCCTATTCCCTGAACAGACGGGAGCGCAAACGGGAAAGGGACCGGATCCGTAGAATGAAATTGAAGATCCTCGCGAATCCGTCCCGGAGCCCGACAGCGTCGAAGATCCTCGAAACGATCACGCCAAAGAAAGAGACCGATCagctGTCACGAAGAGTGATCTCGCGAGCCGTTCACGAGTGCGTTAAATGCGGGGCCTGTTTCTGCCACACCAGGAAGCTCGTGGAGCACCTGAAGAACCTCCACGgaatcgacagggccttcagctgcgacgagtgcggcaaaacgttcagaagccccatgaacatagcccgtcacaaattgatacacaccggttcgaagaagttcgcctgcgacctgtgcgactacagatcgaaccaaaagtccaatctggagagtcatcgccgacggcacaccagagattactcgttcagatgcgagcaatgccggaagggtttcgttctgcggacggagtacctcgagcacgtgaacgttcacacggggaaacaagtgtaccggtgcgaccattgcgacaagtcgtacccgtataagaaaaatttaaccaaccatctgagaacgcagcacgcgaatattctgcccgtggaattgaagaacgacccgccgcggaggcacctgtgcacgatttgcctggaaacgttcccgaggaagttgtccctggagggacacatgagacagcgacacggggttcaggagagaacgaaacatctgtgcgatctgtgcggcgcggtgctgtcttctaagaggagactgatggtgcacagacggggccacgtcaacgagaagatcgcgaaatgcgatttgtgcgacaaagaattctcgagcagggagaacctcggcatacatcggcgggtgcacaccggcgaaaagccgcacggttgcccgcagtgtggcagacgattcacgcagaggacgtctttgatcctgcacctgagCGACTGGGACAACGATCACGACGAGCTTACCAGCTGCGAAGTGTTCAGAATCAAGAGCGAGGATATCCTTCTCGATCCTGGACAGAAATTCGAAGGAAACGAGAAGGTCTGCGACCTTTGTCAAGAAAAGTTTCACTTCGTCACGAGATTGGTGGCGCACCTGAGGATCGTTCACGGTATCCACAGGCCCTTCAAATGCGGCACCTGTGGCAAAACATATCCGCAGCAATTCATGCTGAATGCTCACGTGAAAAAGTCCCACACGCCTAAGACAAGTCCGTGCGGTCAGTGCAGCTTCATGGGGGTGAACGCCGCGGACGTGGAGAGGCACACGAAACGACACCATCGGGAGGTGAAGTTCACCTGCGAAATCTGCAGTGAGAACTTCGTGGACAAGGACTCCCTCATAACCCACACAACCATGCACAATTTCATGCAATATCAACAGTGCAACGCTTGCGGCAGCACGTTCAACGATGTTTACAGTTTAAAGGAGCACAATCGTCTGTACCACTACGACCCGGCGGCACCAACGGAGGAGAAGCTCGAGgtacgcgacccgcagaatatcgagcacaaatgcgacatttgcgggaaaatttacaagtacaagtcggtgctcaagcagcacaaagtaaaggcccacggtgacacgccgaattatgagaggcgtcgatatttgtgcgcgctttgcggcaaggagcttaaaacggcgaaaggtctcgagatccacaatcgttcgcacaccggcgaaaaaccgtacacctgcgaggtgtgcggcaaatgtttcgcctgtgaaacgttgctcaggactcacaatgtcacccacaccggcgaacggaagtactcgtgtgatcagtgtggaaaagccttcacgcagaggtccacgctggtggtgcacaaacgttaccacacaggtgaacgtccgtacgtttgtcccaggtgtggaaagggtttcgtcactagaactgttttgaacactcacatgaagtcctgtcgctga
Protein Sequence: MKLFPFRTKVCTSNSPRDPLNSGGANPLEELCYIKIENSYSLNRRERKRERDRIRRMKLKILANPSRSPTASKILETITPKKETDQLSRRVISRAVHECVKCGACFCHTRKLVEHLKNLHGIDRAFSCDECGKTFRSPMNIARHKLIHTGSKKFACDLCDYRSNQKSNLESHRRRHTRDYSFRCEQCRKGFVLRTEYLEHVNVHTGKQVYRCDHCDKSYPYKKNLTNHLRTQHANILPVELKNDPPRRHLCTICLETFPRKLSLEGHMRQRHGVQERTKHLCDLCGAVLSSKRRLMVHRRGHVNEKIAKCDLCDKEFSSRENLGIHRRVHTGEKPHGCPQCGRRFTQRTSLILHLSDWDNDHDELTSCEVFRIKSEDILLDPGQKFEGNEKVCDLCQEKFHFVTRLVAHLRIVHGIHRPFKCGTCGKTYPQQFMLNAHVKKSHTPKTSPCGQCSFMGVNAADVERHTKRHHREVKFTCEICSENFVDKDSLITHTTMHNFMQYQQCNACGSTFNDVYSLKEHNRLYHYDPAAPTEEKLEVRDPQNIEHKCDICGKIYKYKSVLKQHKVKAHGDTPNYERRRYLCALCGKELKTAKGLEIHNRSHTGEKPYTCEVCGKCFACETLLRTHNVTHTGERKYSCDQCGKAFTQRSTLVVHKRYHTGERPYVCPRCGKGFVTRTVLNTHMKSCR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00361060;
90% Identity: iTF_00684909;
80% Identity: -