Nfab017521.1
Basic Information
- Insect
- Nomada fabriciana
- Gene Symbol
- -
- Assembly
- GCA_907165295.1
- Location
- OU015694.1:4692274-4698716[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.69 66 4.4 1.2 2 21 138 157 138 158 0.87 2 22 0.56 54 4.7 0.1 1 22 164 185 164 185 0.94 3 22 0.028 2.7 8.8 5.8 1 23 198 221 198 221 0.92 4 22 0.0045 0.43 11.3 5.0 1 23 532 555 532 555 0.95 5 22 4.7 4.5e+02 1.8 0.7 5 23 562 581 561 581 0.92 6 22 0.00047 0.046 14.3 1.1 2 23 587 608 586 608 0.96 7 22 0.67 65 4.4 3.0 1 20 635 654 635 656 0.90 8 22 0.0025 0.24 12.1 0.7 1 22 775 796 775 796 0.96 9 22 1.7e-05 0.0017 18.9 0.4 2 23 804 826 804 826 0.94 10 22 0.37 35 5.2 6.0 3 23 838 859 836 859 0.94 11 22 0.52 50 4.8 0.1 2 19 879 896 879 899 0.88 12 22 0.099 9.5 7.0 5.1 1 23 906 929 906 929 0.93 13 22 0.32 30 5.4 4.8 1 23 940 963 940 963 0.93 14 22 0.44 43 5.0 0.1 1 19 1003 1021 1003 1021 0.95 15 22 0.53 51 4.7 5.1 1 23 1031 1054 1031 1054 0.94 16 22 2.6 2.5e+02 2.6 3.6 1 21 1063 1083 1063 1086 0.81 17 22 0.0015 0.14 12.8 0.3 1 20 1122 1141 1122 1143 0.95 18 22 0.00075 0.072 13.7 0.5 3 23 1152 1172 1150 1172 0.96 19 22 0.0018 0.17 12.5 1.0 1 23 1182 1205 1182 1205 0.93 20 22 2.4e-05 0.0023 18.4 0.2 2 21 1262 1281 1261 1282 0.93 21 22 0.0015 0.15 12.7 0.4 2 23 1290 1311 1289 1311 0.98 22 22 0.38 37 5.2 3.6 1 23 1321 1344 1321 1344 0.94
Sequence Information
- Coding Sequence
- ATGGCTCGTGTCCATGTTTATGAACGGGCGGTCAATGCTGTCTTTACGGGTAGCAGATTCAATGAAACATCAAACCTGTCCTATCACGGATTGAAAATTAAGGAAGAGCCATTCGATTCAGATAAGGACACGCCAGATGAGTCGTCATCAGATAATGAAAATACCACAGATCGATGTAAGCTAATATCACCTGAAGCTGAATCTTCAGATGCCGTCAATCGCACTGGTTCGGCGCAAGTTCTCACTGATCCCGAATATATAAAATCGAATTTTTATGAAGTCGAACGTAAAAGCTTGTCATCGGAAGACTCGGCACCAAACGATATGCCACATTTGACATCAAATAAAAAAGTTGATCAGGCTACAAGCTTTTCACATCGTAGGCAAATGGAAGTAACTACGTGGACGCCAACTTGCAATATTTGTTTTATAAGATTTCCACATAAAAAAGCTTTATCATTCCACTACAAAACGATTAAAAATGTAGGGTTCGATTGCAAAAAGTGTAACGCTTGGTTTATTAGTCGTGCCATGTGGGCACGCCACCAGAAAATGCGCAATTGTAAAGAATCATGTGATGCGCGGCTTAAATACGCGTGCCATTTTTGTGATCGAAAGTTTCCTACTAAAAATTACATTCAAAAGCATTTATTCCATTCTCATGGGGACTTAATACATTATGGTAAAACTGAAACTATTTTAACAGATAGTACTAATGATCTTGTGACGAGAACTCCTGAAGCATCCGACAATTTGTATGGTTCTATCCATAAACAGAAAACGAAGTTCAGTGGTTCGAACGATACATGCGCGAGTACTTTATCTGATCCAAACGGTGCCCGTTTGAAAAGATTCCACGGTCTAACAAGTACACCATTAAAAAAATTGAAGAGTCCCAATTCTTCACCCTCGAGAAAGATGGGGAATTCAGGCAGTTCATTCACGAAAAGATTGAAATTCGAAAACGGTTCGTGTAGTTCACCTGCAAAAAGACAGAGGCAGACTATTCTTACTGATTTCATATCGCTATGTAAAAACGTAGAAAAAGTTGAGTGTGTTAGTCCACAGAAAGTGACTGCCACAGAAGATGGTCGAGTATTTAATAATGATAATGGTAGTTGCAATGAAACTCCTGCATCATCAACGGTCCCAATAAAGACTGAGATGTCCACGCCTGTTGAGATCCCTAAAATTAATACACCTCGTAGTAAAGTACCATTTGTTCGAATACACATCGATCCCGGTATGATGATGGAATTATTAAGTAATAAGAAAACAAATACTGAACTTGAAAGTTCATCTACTCCTAGTGATAAATCGTACAATCTTAGATCAGAAAGAACGAGGCTTTCTGATTCAGCTATGTTTAGCGATTCGCCCTGCAAGAGAAGAAAAGTGAGTGATACGCCTAGGCAAAGTCGAAGATTGTCGCAGTGTCAAAGATTGAAGGCCAAATTTAATTGCAAAGAATGTTCAGTTTATCTCGAAAAATGTGATAAAATTTTGATTAAACGGAACTATAAATTAGAAAATTGTGGAAACTATACGAAATATAACTTACGGCAAGATATCGCCAAAGTTGACCAGAAGTTGTATCGATGCCACCTATGCAGCAAGCACTTCTCTTTAAAGGAGAACATGCGTGAACACCTAGAATTATTTCATGTAGTTTATATGTCGAGCATATGCAAAGCGCGATATACATCTATGAATAAATTACTGAAACATTATTTTCGTCAACATATCTCCAAACGCCAAGAATGCTGTGTATGTCGCGAGACATTTAAGTCGCCAGTATTATTGAAGCAACATATGATCCTGCATTGCCTTAAGACCACACAATCCAAGAAGGACACACAATCAGTTGATATTGAAATTAATTGCAACAGATTTAAAAAGCAACACAAATGCAAAGGTTGCCGTAAACGATTTTGGTTACGTTCATGTTTGACTCAACATGGGCAGGTATGTAACCGAATGAATAACCGAAAAGATGAACAGAAAAATCCTCGCATACAAGAATCACCGTCGTCGTGTTCTGAAGAAACAAGGGATCCGAAAGGTAACGTTACCGATGCTCAATACACTATCGACTGTTCGGCACAGTATTCAAGCAACGATCATCCTGTGCAGGCGCCTGATTTGAAACAAGGGGTGTCTTTGACAAATGCAGAGTCTCCCAAAAGTGCCGTTTCAAGTAGTCCTATTAAAACTGATGCTCGCATTTCACCCTCATCACCTGCGAATGGAGGTAATAAAAGATTAATCAATGGGATTGCATGTGTAAAGGGGTACCAACTAGACGTGTCAGGAAAGATCAAGTTTCCCTGTACTATTTGTGGGATACAGTTCCAAACATTTCAGAATTTGTGCATACATGAGCGCACCTTCAGCAAACCACCCTACAACCGGTGCAATATCTGTGGTACTACCTTCCCTACTAAAAGACTATTGCAACTTCACATGCTTGCGACTCATACACCTTCTTGTGCGGAGAACTATAAGTTATTCTGCAAATTCTGTAACCAAGGTTTTCATAAAAAGGGATATCTTCAGAGTCATGAGCGACATTTCCACATTTCGCAGCCCCCTAAAACTTGGCCGAGCCCCGATTACCTCTGGAATTCCAGTCCAGTCTGCAACATTTGCAACTTAGTATTCGAATCCTACGAACGGTTCATCGAACACAATATGTACTACTACAAGGGCCAAGTTTTCGTGTGCACATTTTGTAACAAATCGTTCCAAGGAATGTATCAGCTTCATCATCACAACAAGTTAGTGCACAATCCGGCTAGCGCGCGGAAATCGTACCTTTATAACTGCGATGTTTGCAACGAAGGGTTCAATTTCGAAACGCATTTCCATGCGCACAAATTACACGTTCACTTGTGCAAGTCGAATTCTAGGCAGCTATATGTAAATACAATGCAAGATCACAATTATGCGTTGACATCTAACAATATTGCGGAAACAACAGAGCCCATGGGGGTACCTGCGAAAACCTACGCCTGTAGCGTGTGCGCCTTGAACTTCACCAACGAGGAGGACCTATCTTTGCACGATATAGAATATTCCATGGATGGTGACTATCACTGCAACAAATGCAGTCGAAAGTGTCGCACCAGTGCAATCCTTGCCAAGCACCAGAGTTTGAATCACGCTGGCTGCGATATTAACCAGAGTTACAAGTGCCGTGTCTGCGGAGAAGTATCGACGACTAGTACGTCCATGTTGTGCCACGAGAAACATTTTCACGGAAACAGTACAAATAATGCCGCGAAAATTAATACGTCGACCGAATTGGCCAGGGATCGGAGCTTTAACCTAAGCAAAGATAAGGACGTGTTTATAGACGATACTTTTACGTGTTTGACTTGTGGAATGAAGTTTGATGACGAGATAAATTTGAAGCATCATTTATTGGAGTATTCCAATATAGGCGTATATGGCTGTAACATTTGCCAAAGAAAGTTTACTGAACAATATTTACTGGAAGTACACAAAGCGAAACATGCCAGGCTGAACAGCACTTCGTCTCCTCATCGATGCCCAATATGCAACGAAGAATTTACAAACGTGGCGAACATTCGGACACACGTGTTACATCTACATCGCTACGAATCGTTCGGTACTAATAGAGAGCAACAAAACTCTCAGAACGCTAACAATGCTCAGAACAATAAGAATCCTATTTCGTCAATCCTGTCTACAAATGTAACTGAGCCACTCAATGGTTTCGCACCCCCTGCTACTAATAGTGCGCTAAAGGAGAATACTGTGAAGTGTCCCGAGTGTGATGTAGCATTTAGCAGCAGCAAGAATCTAACGAAACACAGGTCAAGATATGTGAACTCTGGGGATAACCAATGCACCATTTGCGGTCGTAGATTTCCTTGGGTCACGTCACTCGAGCAACATTTACGTAAACACAACGCTGTTGAGAATCGTTTCTTGAAGCACAAGTGTTATCACTGCGCGGAAAGATTCCGAAGCTCTGTGGCAGTTTATTCGCATATCATTCACATCCATGGTAAAGACAAGTTGGTAAGTTCTGCTAGCGACGCAAGCAAGACTAACAACAGCAATGTTAACAAAAAGGTCTCTACTTTGATCGAAAGTAGCCCGCCCGTGAACAATCTTCCTGACAACTCTGAACCTTTAGCCATGCCTCCAAAAGAATATGAAAATGATCAAGATAAAACTTCTACGGCTGCCACGATTGTAAACGAACCAGCCGCAAATAAATGTGCAGAAATAAATGCGCCCGCAAAGACTGCGGTAGGAAATGATATTTTAAAAAATGCGGTAAGAAAGTCGCTCCATGACTTGGAGCAGCCAACATTGAAAAACGTTCAACCACACATTGATACCATACCGGAAAAAGCCGGCGAAACTAGCGAAACTTCTCCAAGTGAGGTAATTAATAAGATTGAAGCAGATTCTACGATGAATAATTCGCTTCATAATCCCCATTTCACTGGGGACGAGATTTTTCAGCGTATGCTAGAACTTCATAGTAATTGCGAATCATCTGGCTTAGTACTTAATCCTTCGATAGATGAGCACGATTCTGAGGCGATTGAAATTGTTTGGGAAAAGAATGCAAGTCTTGAAAAATGTGTAGTGCTCAGCGATAGCGATCCGGATGTACAGATAATAATGGACTGTCGTCAACCGTCTGTAATTCAGCAGAAAGAGAACAGTTTGCCGGTAAATTTAAAACCCCCAAGCAGTGAAGTTGGACGATTAAAAGTCCGGTCGTTCGCAAAGATTGTTGACTGA
- Protein Sequence
- MARVHVYERAVNAVFTGSRFNETSNLSYHGLKIKEEPFDSDKDTPDESSSDNENTTDRCKLISPEAESSDAVNRTGSAQVLTDPEYIKSNFYEVERKSLSSEDSAPNDMPHLTSNKKVDQATSFSHRRQMEVTTWTPTCNICFIRFPHKKALSFHYKTIKNVGFDCKKCNAWFISRAMWARHQKMRNCKESCDARLKYACHFCDRKFPTKNYIQKHLFHSHGDLIHYGKTETILTDSTNDLVTRTPEASDNLYGSIHKQKTKFSGSNDTCASTLSDPNGARLKRFHGLTSTPLKKLKSPNSSPSRKMGNSGSSFTKRLKFENGSCSSPAKRQRQTILTDFISLCKNVEKVECVSPQKVTATEDGRVFNNDNGSCNETPASSTVPIKTEMSTPVEIPKINTPRSKVPFVRIHIDPGMMMELLSNKKTNTELESSSTPSDKSYNLRSERTRLSDSAMFSDSPCKRRKVSDTPRQSRRLSQCQRLKAKFNCKECSVYLEKCDKILIKRNYKLENCGNYTKYNLRQDIAKVDQKLYRCHLCSKHFSLKENMREHLELFHVVYMSSICKARYTSMNKLLKHYFRQHISKRQECCVCRETFKSPVLLKQHMILHCLKTTQSKKDTQSVDIEINCNRFKKQHKCKGCRKRFWLRSCLTQHGQVCNRMNNRKDEQKNPRIQESPSSCSEETRDPKGNVTDAQYTIDCSAQYSSNDHPVQAPDLKQGVSLTNAESPKSAVSSSPIKTDARISPSSPANGGNKRLINGIACVKGYQLDVSGKIKFPCTICGIQFQTFQNLCIHERTFSKPPYNRCNICGTTFPTKRLLQLHMLATHTPSCAENYKLFCKFCNQGFHKKGYLQSHERHFHISQPPKTWPSPDYLWNSSPVCNICNLVFESYERFIEHNMYYYKGQVFVCTFCNKSFQGMYQLHHHNKLVHNPASARKSYLYNCDVCNEGFNFETHFHAHKLHVHLCKSNSRQLYVNTMQDHNYALTSNNIAETTEPMGVPAKTYACSVCALNFTNEEDLSLHDIEYSMDGDYHCNKCSRKCRTSAILAKHQSLNHAGCDINQSYKCRVCGEVSTTSTSMLCHEKHFHGNSTNNAAKINTSTELARDRSFNLSKDKDVFIDDTFTCLTCGMKFDDEINLKHHLLEYSNIGVYGCNICQRKFTEQYLLEVHKAKHARLNSTSSPHRCPICNEEFTNVANIRTHVLHLHRYESFGTNREQQNSQNANNAQNNKNPISSILSTNVTEPLNGFAPPATNSALKENTVKCPECDVAFSSSKNLTKHRSRYVNSGDNQCTICGRRFPWVTSLEQHLRKHNAVENRFLKHKCYHCAERFRSSVAVYSHIIHIHGKDKLVSSASDASKTNNSNVNKKVSTLIESSPPVNNLPDNSEPLAMPPKEYENDQDKTSTAATIVNEPAANKCAEINAPAKTAVGNDILKNAVRKSLHDLEQPTLKNVQPHIDTIPEKAGETSETSPSEVINKIEADSTMNNSLHNPHFTGDEIFQRMLELHSNCESSGLVLNPSIDEHDSEAIEIVWEKNASLEKCVVLSDSDPDVQIIMDCRQPSVIQQKENSLPVNLKPPSSEVGRLKVRSFAKIVD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01070605;
- 90% Identity
- -
- 80% Identity
- -