Nfab008070.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Nomada fabriciana
Gene Symbol
-
Assembly
GCA_907165295.1
Location
OU015697.1:5427829-5430539[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 5.5 5.3e+02 1.5 0.8 1 10 319 328 319 341 0.76
2 15 0.34 33 5.3 0.8 1 23 349 372 349 372 0.89
3 15 0.09 8.7 7.2 2.5 1 22 378 399 378 402 0.88
4 15 0.093 8.9 7.1 4.3 1 23 485 507 485 507 0.93
5 15 0.0024 0.24 12.1 0.5 1 23 514 537 514 537 0.92
6 15 0.00084 0.081 13.5 3.1 1 23 543 565 543 565 0.97
7 15 7.6e-05 0.0073 16.8 2.3 1 23 571 593 571 593 0.99
8 15 1.2e-05 0.0012 19.3 1.4 1 23 599 621 599 621 0.97
9 15 0.00058 0.056 14.1 0.1 1 23 634 657 634 657 0.95
10 15 0.00012 0.011 16.2 4.3 1 23 673 696 673 696 0.96
11 15 0.00014 0.014 16.0 0.3 1 23 704 727 704 727 0.98
12 15 0.00055 0.053 14.1 0.7 1 23 733 755 733 755 0.97
13 15 0.00043 0.041 14.5 5.2 1 23 761 783 761 783 0.98
14 15 6.8e-06 0.00066 20.1 1.0 1 23 789 812 789 812 0.98
15 15 0.0003 0.029 15.0 0.9 2 23 818 839 818 839 0.97

Sequence Information

Coding Sequence
ATGGAGGCATTGAAGGATACTGTAACGTGTCGTTTATGCGGTGTAAATATTACAGATCGAGAATGTAAAAGCATCCTTGAAGGATCGACTGACTTAATACAGAAAATAAAAAGAACATTACCAATTTCAATTTCAACAGACGACAATGGTTCAAAATATGTATGCTTACCGTGCTATGACAAAATCATTCTTTATTATAAATTTATCCAAGAGGTTGTGGACTATTCGAAAGGAATGGAAAATGTGTTGCAGAAGGCATCCTTATTTAATATACCCAAAGAAGTTATAGACTTCTCGGAAGTACATAGCGATGCTGTGTATGCATGTCCTAATTGCAATGTAGATTTAATGATTTTATTAGTCAGTAATCCACAAGGCTGTGATTATACCTTCCAAATCTCGTTAGCTATGGTAAATCAATCTGAAAAAAAACCTCGTGCAAAGGAAAAGAAAATTGGATTGCATAAAAATGTAGAGCGACTTATCAATGAGAAAAGTAATGTAAATTTAAGACACGGAAACAAAATAATACCCACAGAAAACACTGACAGTATAGCGAATCAAGTAAGTCTTCTATTACCTATATTAGTGGAAGAAGAAAATGTAAATTACATTTACACATTATCTGATAAACTAAATTCATGTATTGAAATGCAGCAGGAGTTAAAGAGGAAGCACAAAGAGTCAAATAATTCTGAGCTTCCTGTCTGTATGTCAAAAAAATCAAAGCAGGAAGAAATATATGCATCTAATGAGAATTTATTGAACTGTGATTATGATTCTGCAGAAACTTTGCCAAAAAATGAACCAGAAAGTGATAATACTTGTTGGCAAGATAGTGATACAGATTATAGAAGTGAGAAAGAAGATATATGTATGACTGAAACACAAGGTACTATATGTAAGGAAGATGATGCGCAAGAAGAAAACGATCTATACAAATCTTGTTTGAAGTATGTATGTAAATTATGCGGTGCACGTTATCTTTCCCATATGAAGTACGAATTTCATATAGAGAGGCATAAATTAGATAAGATAGATAAATATGAATGTATAGTGTGCGATAAAGAAACGAGTAATGAAAATTTGTTATGGGATCACTATTTTCACACGCATAAAAGTTTACAACGTTATATTTGTATAGAATGTGGCAAATTATTTACAAAACGATCTCGGTTAACTGGACATCAAAAACATTATAAACATTCTGGTATGAAGCAAATAGAAATTGATACCAGTAAAGATATTCTCAGTCAAGATGTTATACAAAATGCAATTTCAAAAACTGCAGAAGAGAAAGTTTCTGTGAACTGCAATCTCTGTGGTAAACTAATTTCTGACTTAGATCCAGATGCTATTAATGACTTAGTTACGTGCGTTACTTGCGAAGAAGATTCAACGTTATCATTAATGGTTGATGGTAACGAGACGAAAGTAATCTCACCGCGTCAGTATCATTGCTCTATGTGTCCGAAACATTTTGTACGCAGAGAGAGATTAGAATTTCATGAAATGAGGCATAATGAGAATATGAACGAGTTCGTTTGTAGTACTTGCGGAAAAGAATTTAGAGCAGAAAATTCCTTGTACGAGCATTATCTTTTTGTTCACAAAGGTGCAAGACCACACATTTGCGAATTATGTGGTAAATCATTTCAATTGAAGGCCAGACTAAAAGAACACCATCGAATTCACACAGGTGAAAGGCCGTACCAATGCGATATTTGTGGCCAGCGATGTAGAACGACGAATGCTTTGAAACTTCATAGAAAGATTCATTTTTCTCATAACAGATATGCTTGTAACATTTGTAGTAAGTCATTTACCAAGAAACAGAATATGAATGAACACTTAGAAAAACATTGGAAGAATGATAAAAGTGTGACATTACCGCAGTTATTTACATGCCCAATTTGTGTAGAAGGCTTCCCGACATATCGTATGTTAAGATACCATATGATAGAAGTTCATGAAGTGAATAGTCAGGATCCAATTCTGACGAAACAGAAGCCTTGGTATGAGTGCACAGAATGTCACGAAAAGTTTAAACATCAGATGTCCCTAAAGGCACATAAAGAAAGAGTACACGAAGGAAGAGTGGACCCAGTTTATGAGTGTGACATATGTAATGCAACATATAGAGTAAAGCAACTTTTGGTAAACCATATCAAGAGTAAACATAACGGTGAAAGACGTTACAAATGTGCACAATGTGAGAAAGGATTTAACGACACTAAGTCATTATATAATCACGTATTATTACATACCGGTAAAAAACCATTCGTTTGTGAATACTGTAATATGAGTTTTAGAAGGAAGGATTCTAGAGACCACCATCGTAGGAAACATACTGGTGAACAACCTTATCAATGTCCCGACTGTGGTGAATCATTTGCTACTTACAATAATCGATCTAAACATCGAAAACGAGAACATGGGGAAGGTGATCCTGAATGTCCTGAATGCGGTGAAAAATGTAGTAATCAGCAAGAAATTAGGATACATTTAAATAAGCACCTTGGAGAAAAATTGAAAAAATTACAAAAGGAGTAA
Protein Sequence
MEALKDTVTCRLCGVNITDRECKSILEGSTDLIQKIKRTLPISISTDDNGSKYVCLPCYDKIILYYKFIQEVVDYSKGMENVLQKASLFNIPKEVIDFSEVHSDAVYACPNCNVDLMILLVSNPQGCDYTFQISLAMVNQSEKKPRAKEKKIGLHKNVERLINEKSNVNLRHGNKIIPTENTDSIANQVSLLLPILVEEENVNYIYTLSDKLNSCIEMQQELKRKHKESNNSELPVCMSKKSKQEEIYASNENLLNCDYDSAETLPKNEPESDNTCWQDSDTDYRSEKEDICMTETQGTICKEDDAQEENDLYKSCLKYVCKLCGARYLSHMKYEFHIERHKLDKIDKYECIVCDKETSNENLLWDHYFHTHKSLQRYICIECGKLFTKRSRLTGHQKHYKHSGMKQIEIDTSKDILSQDVIQNAISKTAEEKVSVNCNLCGKLISDLDPDAINDLVTCVTCEEDSTLSLMVDGNETKVISPRQYHCSMCPKHFVRRERLEFHEMRHNENMNEFVCSTCGKEFRAENSLYEHYLFVHKGARPHICELCGKSFQLKARLKEHHRIHTGERPYQCDICGQRCRTTNALKLHRKIHFSHNRYACNICSKSFTKKQNMNEHLEKHWKNDKSVTLPQLFTCPICVEGFPTYRMLRYHMIEVHEVNSQDPILTKQKPWYECTECHEKFKHQMSLKAHKERVHEGRVDPVYECDICNATYRVKQLLVNHIKSKHNGERRYKCAQCEKGFNDTKSLYNHVLLHTGKKPFVCEYCNMSFRRKDSRDHHRRKHTGEQPYQCPDCGESFATYNNRSKHRKREHGEGDPECPECGEKCSNQQEIRIHLNKHLGEKLKKLQKE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01068496;
90% Identity
iTF_01067136;
80% Identity
-